Intercontinental genomic parallelism in multiple three-spined stickleback adaptive radiations

Parallelism in eco-morphology and gene expression despite variable evolutionary and genomic backgrounds in a Holarctic fish

(2020) Arne Jacobs et al.   PLoS Genetics

On the causes of geographically heterogeneous parallel evolution in sticklebacks

(2020) Bohao Fang et al.   Nature Ecology & Evolution

DNA fragility in the parallel evolution of pelvic reduction in stickleback fish

(2019) Kathleen T. Xie et al.   SCIENCE

Ecological factors and morphological traits are associated with repeated genomic differentiation between lake and stream stickleback

(2019) Diana J. Rennison et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Shared patterns of genome-wide differentiation are more strongly predicted by geography than by ecology

(2019) Diana Jessie Rennison et al.   AMERICAN NATURALIST

Phylogeography and Ecological Niche Shape the Cichlid Fish Gut Microbiota in Central American and African Lakes

(2019) Laura Baldo et al.   Frontiers in Microbiology

Genomics of Parallel Ecological Speciation in Lake Victoria Cichlids

(2018) Joana Isabel Meier et al.   MOLECULAR BIOLOGY AND EVOLUTION

Worldwide phylogeny of three-spined sticklebacks

(2018) Bohao Fang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Divergent Uses of “Parallel Evolution” during the History of The American Naturalist

(2018) Yoel E. Stuart   AMERICAN NATURALIST

Gene flow and selection interact to promote adaptive divergence in regions of low recombination

(2017) Kieran Samuk et al.   MOLECULAR ECOLOGY

RADseq provides unprecedented insights into molecular ecology and evolutionary genetics: comment on Breaking RAD by Lowry et al . (2016)

(2017) Garrett J. McKinney et al.   Molecular Ecology Resources

Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations

(2017) Julian M. Catchen et al.   Molecular Ecology Resources

Adaptive and non-adaptive divergence in a common landscape

(2017) Joost A. M. Raeymaekers et al.   Nature Communications

Contrasting effects of environment and genetics generate a continuum of parallel evolution

(2017) Yoel E. Stuart et al.   Nature Ecology & Evolution

Rapid genomic changes in Drosophila melanogaster adapting to desiccation stress in an experimental evolution system

(2016) Lin Kang et al.   BMC GENOMICS

Genomic evidence that resource-based trade-offs limit host-range expansion in a seed beetle

(2016) Zachariah Gompert et al.   EVOLUTION

Region-wide and ecotype-specific differences in demographic histories of threespine stickleback populations, estimated from whole genome sequences

(2016) Shenglin Liu et al.   MOLECULAR ECOLOGY

The ecology of an adaptive radiation of three-spined stickleback from North Uist, Scotland

(2016) Isabel S. Magalhaes et al.   MOLECULAR ECOLOGY

Breaking RAD: an evaluation of the utility of restriction site-associated DNA sequencing for genome scans of adaptation

(2016) David B. Lowry et al.   Molecular Ecology Resources

The genetic and molecular architecture of phenotypic diversity in sticklebacks

(2016) Catherine L. Peichel et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Convergent local adaptation to climate in distantly related conifers

(2016) S. Yeaman et al.   SCIENCE

Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation

(2016) James B. Pease et al.   PLOS BIOLOGY

Genomics of Rapid Incipient Speciation in Sympatric Threespine Stickleback

(2016) David A. Marques et al.   PLoS Genetics

RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping

(2015) O. A. Ali et al.   GENETICS

Evaluating genomic divergence and parallelism in replicate ecomorphs from young and old cichlid adaptive radiations

(2015) Matthew D. McGee et al.   MOLECULAR ECOLOGY

Evolution of Darwin’s finches and their beaks revealed by genome sequencing

(2015) Sangeet Lamichhaney et al.   NATURE

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

Contrasting Patterns of Phenotype-Dependent Parasitism within and among Populations of Threespine Stickleback

(2014) William E. Stutz et al.   AMERICAN NATURALIST

The Evolutionary Genomics of Cichlid Fishes: Explosive Speciation and Adaptation in the Postgenomic Era

(2014) Frederico Henning et al.   Annual Review of Genomics and Human Genetics

GENETIC ARCHITECTURE OF SKELETAL EVOLUTION IN EUROPEAN LAKE AND STREAM STICKLEBACK

(2014) Daniel Berner et al.   EVOLUTION

Modular Skeletal Evolution in Sticklebacks Is Controlled by Additive and Clustered Quantitative Trait Loci

(2014) Craig T. Miller et al.   GENETICS

PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R

(2014) Bastian Pfeifer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Standing Genetic Variation Drives Repeatable Experimental Evolution in Outcrossing Populations of Saccharomyces cerevisiae

(2014) Molly K. Burke et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

(2014) Tami E. Cruickshank et al.   MOLECULAR ECOLOGY

Stick Insect Genomes Reveal Natural Selection's Role in Parallel Speciation

(2014) V. Soria-Carrasco et al.   SCIENCE

Parallel evolution of Nicaraguan crater lake cichlid fishes via non-parallel routes

(2014) Kathryn R. Elmer et al.   Nature Communications

Inappropriate analysis does not reveal the ecological causes of evolution of stickleback armour: a critique of Spence et al. 2013

(2014) Andrew D. C. MacColl et al.   Ecology and Evolution

Parallel developmental genetic features underlie stickleback gill raker evolution

(2014) Andrew M Glazer et al.   EvoDevo

Fast Evolution from Precast Bricks: Genomics of Young Freshwater Populations of Threespine Stickleback Gasterosteus aculeatus

(2014) Nadezhda V. Terekhanova et al.   PLoS Genetics

Robust Identification of Local Adaptation from Allele Frequencies

(2013) T. Gunther et al.   GENETICS

Repeated and predictable patterns of ecotypic differentiation during a biological invasion: lake-stream divergence in parapatric Swiss stickleback

(2013) K. Lucek et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Genomic architecture of ecologically divergent body shape in a pair of sympatric crater lake cichlid fishes

(2013) Paolo Franchini et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Recombination in the threespine stickleback genome-patterns and consequences

(2013) Marius Roesti et al.   MOLECULAR ECOLOGY

Exceptional Convergence on the Macroevolutionary Landscape in Island Lizard Radiations

(2013) D. L. Mahler et al.   SCIENCE

Ecological causes of morphological evolution in the three-spined stickleback

(2013) Rowena Spence et al.   Ecology and Evolution

Convergent Evolution within an Adaptive Radiation of Cichlid Fishes

(2012) Moritz Muschick et al.   CURRENT BIOLOGY

Plasticity and heritability of morphological variation within and between parapatric stickleback demes

(2012) R. J. S. McCAIRNS et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Parallel and nonparallel ecological, morphological and genetic divergence in lake-stream stickleback from a single catchment

(2012) M. Ravinet et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

The probability of genetic parallelism and convergence in natural populations

(2012) G. L. Conte et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Genome-wide SNP Genotyping Array Reveals Patterns of Global and Repeated Species-Pair Divergence in Sticklebacks

(2011) Felicity C. Jones et al.   CURRENT BIOLOGY

PARALLEL AND NONPARALLEL ASPECTS OF ECOLOGICAL, PHENOTYPIC, AND GENETIC DIVERGENCE ACROSS REPLICATE POPULATION PAIRS OF LAKE AND STREAM STICKLEBACK

(2011) Renaud Kaeuffer et al.   EVOLUTION

Local De Novo Assembly of RAD Paired-End Contigs Using Short Sequencing Reads

(2011) Paul D. Etter et al.   PLoS One

The ecological causes of evolution

(2011) Andrew D.C. MacColl   TRENDS IN ECOLOGY & EVOLUTION

Adaptation in the age of ecological genomics: insights from parallelism and convergence

(2011) Kathryn R. Elmer et al.   TRENDS IN ECOLOGY & EVOLUTION

Adaptive Radiation, Ecological Opportunity, and Evolutionary Determinism

(2010) Jonathan B. Losos   AMERICAN NATURALIST

Habitat complexity modulates phenotype expression through developmental plasticity in the threespine stickleback

(2010) MÓNICA V. GARDUÑO-PAZ et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Using Environmental Correlations to Identify Loci Underlying Local Adaptation

(2010) G. Coop et al.   GENETICS

A High Incidence of Selection on Physiologically Important Genes in the Three-Spined Stickleback, Gasterosteus aculeatus

(2010) Y. Shimada et al.   MOLECULAR BIOLOGY AND EVOLUTION

Constraints on speciation suggested by comparing lake-stream stickleback divergence across two continents

(2010) DANIEL BERNER et al.   MOLECULAR ECOLOGY

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer

(2009) Y. F. Chan et al.   SCIENCE

Adaptive Radiation: Contrasting Theory with Data

(2009) S. Gavrilets et al.   SCIENCE

Parasite burdens differ between sympatric three-spined stickleback species

(2008) Andrew D. C. MacColl   ECOGRAPHY

UNDERSTANDING THE EVOLUTION AND STABILITY OF THE G-MATRIX

(2008) Stevan J. Arnold et al.   EVOLUTION

Mitochondrial DNA phylogeography of the three-spined stickleback (Gasterosteus aculeatus) in Europe—Evidence for multiple glacial refugia

(2007) H.S. Mäkinen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Convergence and parallelism reconsidered: what have we learned about the genetics of adaptation?

(2007) J ARENDT et al.   TRENDS IN ECOLOGY & EVOLUTION