Disentangling the Relative Roles of Vertical Transmission, Subsequent Colonizations, and Diet on Cockroach Microbiome Assembly

Phylosymbiosis across deeply diverging lineages in omnivorous cockroaches

(2020) Kara A. Tinker et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats

(2020) Se Jin Song et al.   mBio

Synergies Between Division of Labor and Gut Microbiomes of Social Insects

(2020) Veronica M. Sinotte et al.   Frontiers in Ecology and Evolution

PICRUSt2 for prediction of metagenome functions

(2020) Gavin M. Douglas et al.   NATURE BIOTECHNOLOGY

Unraveling Assemblage, Functions and Stability of the Gut Microbiota of Blattella germanica by Antibiotic Treatment

(2020) Rebeca Domínguez-Santos et al.   Frontiers in Microbiology

Tibet plateau probiotic mitigates chromate toxicity in mice by alleviating oxidative stress in gut microbiota

(2020) Pengya Feng et al.   Communications Biology

Conspecific coprophagy stimulates normal development in a germ-free model invertebrate

(2019) Benjamin C. Jahnes et al.   PeerJ

Evolutionary and Ecological Consequences of Gut Microbial Communities

(2019) Nancy A. Moran et al.   Annual Review of Ecology Evolution and Systematics

Diet is not the primary driver of bacterial community structure in the gut of litter-feeding cockroaches

(2019) Niclas Lampert et al.   BMC MICROBIOLOGY

Ecology and Host Identity Outweigh Evolutionary History in Shaping the Bat Microbiome

(2019) Holly L. Lutz et al.   mSystems

Host phylogeny, diet, and habitat differentiate the gut microbiomes of Darwin’s finches on Santa Cruz Island

(2019) Wesley T. Loo et al.   Scientific Reports

Rampant Host Switching Shaped the Termite Gut Microbiome

(2018) Thomas Bourguignon et al.   CURRENT BIOLOGY

Role of priority effects in the early-life assembly of the gut microbiota

(2018) Daniel Sprockett et al.   Nature Reviews Gastroenterology & Hepatology

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Gut microbiomes of wild great apes fluctuate seasonally in response to diet

(2018) Allison L. Hicks et al.   Nature Communications

Dynamics of Gut Microbiota Diversity During the Early Development of an Avian Host: Evidence From a Cross-Foster Experiment

(2018) Aimeric Teyssier et al.   Frontiers in Microbiology

The mosquito holobiont: fresh insight into mosquito-microbiota interactions

(2018) Morgane Guégan et al.   Microbiome

Experimental evaluation of the importance of colonization history in early-life gut microbiota assembly

(2018) Inés Martínez et al.   eLife

The gut of the finch: uniqueness of the gut microbiome of the Galápagos vampire finch

(2018) Alice J. Michel et al.   Microbiome

Is Host Filtering the Main Driver of Phylosymbiosis across the Tree of Life?

(2018) Florent Mazel et al.   mSystems

Convergence of gut microbiotas in the adaptive radiations of African cichlid fishes

(2017) Laura Baldo et al.   ISME Journal

The evolution of the host microbiome as an ecosystem on a leash

(2017) Kevin R. Foster et al.   NATURE

Life history and eco-evolutionary dynamics in light of the gut microbiota

(2017) Emilie Macke et al.   OIKOS

Pycnoscelus surinamensis cockroach gut microbiota respond consistently to a fungal diet without mirroring those of fungus-farming termites

(2017) Callum Richards et al.   PLoS One

Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach

(2017) Erin A. Gontang et al.   PLoS One

Lignocellulose pretreatment in a fungus-cultivating termite

(2017) Hongjie Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unraveling the processes shaping mammalian gut microbiomes over evolutionary time

(2017) Mathieu Groussin et al.   Nature Communications

Microbiome Datasets Are Compositional: And This Is Not Optional

(2017) Gregory B. Gloor et al.   Frontiers in Microbiology

Seasonal, spatial, and maternal effects on gut microbiome in wild red squirrels

(2017) Tiantian Ren et al.   Microbiome

Stress and stability: applying the Anna Karenina principle to animal microbiomes

(2017) Jesse R. Zaneveld et al.   Nature Microbiology

Host age, social group, and habitat type influence the gut microbiota of wild ring-tailed lemurs (Lemur catta)

(2016) Genevieve Bennett et al.   AMERICAN JOURNAL OF PRIMATOLOGY

A bacterial filter protects and structures the gut microbiome of an insect

(2016) Michele Caroline Lanan et al.   ISME Journal

Characterization of the gut microbiota of migratory passerines during stopover along the northern coast of the Gulf of Mexico

(2016) William B. Lewis et al.   JOURNAL OF AVIAN BIOLOGY

Displaying Variation in Large Datasets: Plotting a Visual Summary of Effect Sizes

(2016) Gregory B. Gloor et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

Isolation of bacterial strains able to metabolize lignin and lignin-related compounds

(2016) J.-H. Tian et al.   LETTERS IN APPLIED MICROBIOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Functional Redundancy-Induced Stability of Gut Microbiota Subjected to Disturbance

(2016) Andrés Moya et al.   TRENDS IN MICROBIOLOGY

Diversity and resilience of the wood-feeding higher termite Mironasutitermes shangchengensis gut microbiota in response to temporal and diet variations

(2016) Ying Wang et al.   Ecology and Evolution

Disentangling a Holobiont – Recent Advances and Perspectives in Nasonia Wasps

(2016) Jessica Dittmer et al.   Frontiers in Microbiology

Social behavior shapes the chimpanzee pan-microbiome

(2016) A. H. Moeller et al.   Science Advances

The gut microbiota: a major player in the toxicity of environmental pollutants?

(2016) Sandrine P Claus et al.   npj Biofilms and Microbiomes

Historical Contingency in Community Assembly: Integrating Niches, Species Pools, and Priority Effects

(2015) Tadashi Fukami   Annual Review of Ecology Evolution and Systematics

Deterministic Assembly of Complex Bacterial Communities in Guts of Germ-Free Cockroaches

(2015) Aram Mikaelyan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Oxygen Affects Gut Bacterial Colonization and Metabolic Activities in a Gnotobiotic Cockroach Model

(2015) Dorothee Tegtmeier et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Origin of termite eusociality: trophallaxis integrates the social, nutritional, and microbial environments

(2015) CHRISTINE A. NALEPA   ECOLOGICAL ENTOMOLOGY

Why Is Initial Bacterial Colonization of the Intestine Important to Infantsʼ and Childrenʼs Health?

(2015) Pearl D. Houghteling et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

The ecology of the microbiome: Networks, competition, and stability

(2015) K. Z. Coyte et al.   SCIENCE

Classifying the bacterial gut microbiota of termites and cockroaches: A curated phylogenetic reference database (DictDb)

(2015) Aram Mikaelyan et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Social networks predict gut microbiome composition in wild baboons

(2015) Jenny Tung et al.   eLife

The Cockroach Origin of the Termite Gut Microbiota: Patterns in Bacterial Community Structure Reflect Major Evolutionary Events

(2014) Carsten Dietrich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Routes of Acquisition of the Gut Microbiota of the Honey Bee Apis mellifera

(2014) J. Elijah Powell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Anaerobic biodegradation of high-molecular-weight polycyclic aromatic hydrocarbons by a facultative anaerobe Pseudomonas sp. JP1

(2014) Lei Liang et al.   BIODEGRADATION

Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men

(2014) Anne Salonen et al.   ISME Journal

Identifying the core microbial community in the gut of fungus-growing termites

(2014) Saria Otani et al.   MOLECULAR ECOLOGY

Pyrotag Sequencing of the Gut Microbiota of the Cockroach Shelfordella lateralis Reveals a Highly Dynamic Core but Only Limited Effects of Diet on Community Structure

(2014) Christine Schauer et al.   PLoS One

Development of a Prokaryotic Universal Primer for Simultaneous Analysis of Bacteria and Archaea Using Next-Generation Sequencing

(2014) Shunsuke Takahashi et al.   PLoS One

Rapid changes in the gut microbiome during human evolution

(2014) Andrew H. Moeller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomics and host specialization of honey bee and bumble bee gut symbionts

(2014) W. K. Kwong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sympatric chimpanzees and gorillas harbor convergent gut microbial communities

(2013) A. H. Moeller et al.   GENOME RESEARCH

Convergence of gut microbiomes in myrmecophagous mammals

(2013) Frédéric Delsuc et al.   MOLECULAR ECOLOGY

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

ANOVA-Like Differential Expression (ALDEx) Analysis for Mixed Population RNA-Seq

(2013) Andrew D. Fernandes et al.   PLoS One

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Bacterial Community in the Gut of the Cockroach Shelfordella lateralis Reflects the Close Evolutionary Relatedness of Cockroaches and Termites

(2012) Christine Schauer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Highly similar microbial communities are shared among related and trophically similar ant species

(2012) KIRK E. ANDERSON et al.   MOLECULAR ECOLOGY

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Dirichlet Multinomial Mixtures: Generative Models for Microbial Metagenomics

(2012) Ian Holmes et al.   PLoS One

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA