Diversity and Structure of the Endophytic Bacterial Communities Associated With Three Terrestrial Orchid Species as Revealed by 16S rRNA Gene Metabarcoding

Research Advances of Beneficial Microbiota Associated with Crop Plants

(2020) Lei Tian et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Rain induces temporary shifts in epiphytic bacterial communities of cucumber and tomato fruit

(2020) Sarah M. Allard et al.   Scientific Reports

Mitsuaria chitinivorans sp. nov. a potential candidate for bioremediation: emended description of the genera Mitsuaria, Roseateles and Pelomonas

(2020) Shivaji Sisinthy et al.   ARCHIVES OF MICROBIOLOGY

New Insight into the Composition of Wheat Seed Microbiota

(2020) Agnieszka Kuźniar et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Unique and common traits in mycorrhizal symbioses

(2020) Andrea Genre et al.   NATURE REVIEWS MICROBIOLOGY

Plant growth promoting potential of bacterial endophytes from three terrestrial mediterranean orchid species

(2020) Pasquale Alibrandi et al.   PLANT BIOSYSTEMS

Enhanced biocontrol of tomato bacterial wilt using the combined application of Mitsuaria sp. TWR114 and nonpathogenic Ralstonia sp. TCR112

(2019) Malek Marian et al.   JOURNAL OF GENERAL PLANT PATHOLOGY

Plant growth-promoting rhizobacteria: strategies to improve abiotic stresses under sustainable agriculture

(2019) A. Kumar et al.   JOURNAL OF PLANT NUTRITION

A Bioinformatics Guide to Plant Microbiome Analysis

(2019) Rares Lucaciu et al.   Frontiers in Plant Science

Biocontrol potential of Ralstonia sp. TCR112 and Mitsuaria sp . TWR114 against tomato bacterial wilt

(2018) Malek Marian et al.   APPLIED SOIL ECOLOGY

Symbiotic nitrogen fixation by rhizobia — the roots of a success story

(2018) Catherine Masson-Boivin et al.   CURRENT OPINION IN PLANT BIOLOGY

Mitsuaria noduli sp. nov., isolated from the root nodules of Robinia pseudoacacia in a lead–zinc mine

(2018) Miao-Chun Fan et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mycorrhizal fungi affect orchid distribution and population dynamics

(2018) Melissa K. McCormick et al.   NEW PHYTOLOGIST

Consistent associations with beneficial bacteria in the seed endosphere of barley ( Hordeum vulgare L.)

(2018) MD Mahafizur Rahman et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Nutrient- and Dose-Dependent Microbiome-Mediated Protection against a Plant Pathogen

(2018) Maureen Berg et al.   CURRENT BIOLOGY

Context-dependent and variable effects of endohyphal bacteria on interactions between fungi and seeds

(2018) Justin P. Shaffer et al.   Fungal Ecology

Combining Different Potato-Associated Pseudomonas Strains for Improved Biocontrol of Phytophthora infestans

(2018) Mout De Vrieze et al.   Frontiers in Microbiology

Multifaceted Interactions Between Endophytes and Plant: Developments and Prospects

(2018) Ekta Khare et al.   Frontiers in Microbiology

Rhizobia: a potential biocontrol agent for soilborne fungal pathogens

(2017) Krishnashis Das et al.   FOLIA MICROBIOLOGICA

Where less may be more: how the rare biosphere pulls ecosystems strings

(2017) Alexandre Jousset et al.   ISME Journal

Extensive Overlap of Tropical Rainforest Bacterial Endophytes between Soil, Plant Parts, and Plant Species

(2017) Emmanuel Haruna et al.   MICROBIAL ECOLOGY

Mitsuaria sp. and Burkholderia sp. from Arabidopsis rhizosphere enhance drought tolerance in Arabidopsis thaliana and maize (Zea mays L.)

(2017) Xing-Feng Huang et al.   PLANT AND SOIL

The seed endosphere of Anadenanthera colubrina is inhabited by a complex microbiota, including Methylobacteriumspp. and Staphylococcus spp. with potential plant-growth promoting activities

(2017) Pasquale Alibrandi et al.   PLANT AND SOIL

Commentary: seed bacterial inhabitants and their routes of colonization

(2017) Carolina Escobar Rodríguez et al.   PLANT AND SOIL

Bacterial and diazotrophic diversities of endophytes in Dendrobium catenatum determined through barcoded pyrosequencing

(2017) Ou Li et al.   PLoS One

Bioaerosol generation by raindrops on soil

(2017) Young Soo Joung et al.   Nature Communications

Microbiome analysis and confocal microscopy of used kitchen sponges reveal massive colonization by Acinetobacter, Moraxella and Chryseobacterium species

(2017) Massimiliano Cardinale et al.   Scientific Reports

Illumina-Based Analysis of Endophytic and Rhizosphere Bacterial Diversity of the Coastal Halophyte Messerschmidia sibirica

(2017) Xue-Ying Tian et al.   Frontiers in Microbiology

A New Approach to Modify Plant Microbiomes and Traits by Introducing Beneficial Bacteria at Flowering into Progeny Seeds

(2017) Birgit Mitter et al.   Frontiers in Microbiology

Isolation of Endohyphal Bacteria from Foliar Ascomycota andIn VitroEstablishment of Their Symbiotic Associations

(2016) Kayla R. Arendt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial microbiota associated with flower pollen is influenced by pollination type, and shows a high degree of diversity and species-specificity

(2016) Binoy Ambika Manirajan et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial Communities Associated with Different Anthurium andraeanum L. Plant Tissues

(2016) Yohanna Sarria-Guzmán et al.   MICROBES AND ENVIRONMENTS

Plant growth-promoting bacterial endophytes

(2016) Gustavo Santoyo et al.   MICROBIOLOGICAL RESEARCH

Evidence for foliar endophytic nitrogen fixation in a widely distributed subalpine conifer

(2016) Andrew B. Moyes et al.   NEW PHYTOLOGIST

Dendrobium nobile Lindl. seed germination in co-cultures with diverse associated bacteria

(2016) Elena A. Tsavkelova et al.   PLANT GROWTH REGULATION

The number of known plants species in the world and its annual increase

(2016) MAARTEN J.M. CHRISTENHUSZ et al.   Phytotaxa

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

Developmental Peculiarities and Seed-Borne Endophytes in Quinoa: Omnipresent, Robust Bacilli Contribute to Plant Fitness

(2016) Andrea Pitzschke   Frontiers in Microbiology

Acinetobacter species as model microorganisms in environmental microbiology: current state and perspectives

(2015) Jaejoon Jung et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Evidence of nitrogen fixation and growth promotion in canola (Brassica napus L.) by an endophytic diazotroph Paenibacillus polymyxa P2b-2R

(2015) Akshit Puri et al.   BIOLOGY AND FERTILITY OF SOILS

Resource pulses can alleviate the biodiversity–invasion relationship in soil microbial communities

(2015) Cyrus A. Mallon et al.   ECOLOGY

Non-random species loss in bacterial communities reduces antifungal volatile production

(2015) W. H. Gera Hol et al.   ECOLOGY

Endophytic bacteria from Piper tuberculatum Jacq.: isolation, molecular characterization, and in vitro screening for the control of Fusarium solani f. sp piperis, the causal agent of root rot disease in black pepper (Piper nigrum L.)

(2015) S.B. Nascimento et al.   GENETICS AND MOLECULAR RESEARCH

Impact of metagenomic DNA extraction procedures on the identifiable endophytic bacterial diversity in Sorghum bicolor (L. Moench)

(2015) Mapula Kgomotso Annah Maropola et al.   JOURNAL OF MICROBIOLOGICAL METHODS

The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes

(2015) Pablo R. Hardoim et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

(2015) Devin Coleman-Derr et al.   NEW PHYTOLOGIST

Symbiotic in vitro seed propagation of Dendrobium: fungal and bacterial partners and their influence on plant growth and development

(2015) Jaime A. Teixeira da Silva et al.   PLANTA

The vocabulary of microbiome research: a proposal

(2015) Julian R. Marchesi et al.   Microbiome

Indole-3-acetic acid in plant–microbe interactions

(2014) Daiana Duca et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Illumina-based analysis of endophytic bacterial diversity and space-time dynamics in sugar beet on the north slope of Tianshan mountain

(2014) YingWu Shi et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The communities of tomato (Solanum lycopersicumL.) leaf endophytic bacteria, analyzed by 16S-ribosomal RNA gene pyrosequencing

(2014) Fernando M. Romero et al.   FEMS MICROBIOLOGY LETTERS

Invasive species as driving factors for the structure of benthic communities in Lake Constance, Germany

(2014) René Gergs et al.   HYDROBIOLOGIA

Bacterial seed endophytes: genera, vertical transmission and interaction with plants

(2014) Sascha Truyens et al.   Environmental Microbiology Reports

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

Analysis of plant microbe interactions in the era of next generation sequencing technologies

(2014) Claudia Knief   Frontiers in Plant Science

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Endophytic microorganisms—promising applications in bioremediation of greenhouse gases

(2013) Z. Stępniewska et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Design and application of specific 16S rDNA-targeted primers for assessing endophytic diversity in Dendrobium officinale using nested PCR-DGGE

(2013) Jie Yu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana

(2013) Natacha Bodenhausen et al.   PLoS One

Limnobacter spp. as newly detected phenol-degraders among Baltic Sea surface water bacteria characterised by comparative analysis of catabolic genes

(2013) Eve Vedler et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Investigation on diversity and population succession dynamics of endophytic bacteria from seeds of maize (Zea mays L., Nongda108) at different growth stages

(2012) Yang Liu et al.   ANNALS OF MICROBIOLOGY

Distribution of culturable endophytic bacteria in aquatic plants and their potential for bioremediation in polluted waters

(2012) WM Chen et al.   Aquatic Biology

Endophytic microorganisms from coffee tissues as plant growth promoters and biocontrol agents of coffee leaf rust

(2012) Harllen S.A. Silva et al.   BIOLOGICAL CONTROL

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Dynamics of Seed-Borne Rice Endophytes on Early Plant Growth Stages

(2012) Pablo R. Hardoim et al.   PLoS One

Rhizobium Promotes Non-Legumes Growth and Quality in Several Production Steps: Towards a Biofertilization of Edible Raw Vegetables Healthy for Humans

(2012) Paula García-Fraile et al.   PLoS One

Endophytic bacteria isolated from orchid and their potential to promote plant growth

(2012) Deise Cristina Faria et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Isolation and characterization of new plant growth-promoting bacterial endophytes

(2011) Shimaila Rashid et al.   APPLIED SOIL ECOLOGY

Characterization of ACC deaminase-producing endophytic bacteria isolated from copper-tolerant plants and their potential in promoting the growth and copper accumulation of Brassica napus

(2011) Yan-feng Zhang et al.   CHEMOSPHERE

Acinetobacter infection - an emerging threat to human health

(2011) Paolo Visca et al.   IUBMB LIFE

The Ecology, Biology and Pathogenesis of Acinetobacter spp.: An Overview

(2011) Hamuel James Doughari et al.   MICROBES AND ENVIRONMENTS

Endophytes of Grapevine Flowers, Berries, and Seeds: Identification of Cultivable Bacteria, Comparison with Other Plant Parts, and Visualization of Niches of Colonization

(2011) Stéphane Compant et al.   MICROBIAL ECOLOGY

Microbial Diversity Inside Pumpkins: Microhabitat-Specific Communities Display a High Antagonistic Potential Against Phytopathogens

(2011) Michael Fürnkranz et al.   MICROBIAL ECOLOGY

Evidence from field nitrogen balance and 15N natural abundance data for the contribution of biological N2 fixation to Brazilian sugarcane varieties

(2011) Segundo Urquiaga et al.   PLANT AND SOIL

Growth promotion effects of the endophyte Acinetobacter johnsonii strain 3-1 on sugar beet

(2011) Yingwu Shi et al.   SYMBIOSIS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Bioremediation of heavy metals by growing hyperaccumulaor endophytic bacterium Bacillus sp. L14

(2010) Hanjun Guo et al.   BIORESOURCE TECHNOLOGY

Optimizing the analysis of human intestinal microbiota with phylogenetic microarray

(2010) Laura Rigsbee et al.   FEMS MICROBIOLOGY ECOLOGY

Diversity of bacterial endophytes in roots of Mexican husk tomato plants (Physalis ixocarpa) and their detection in the rhizosphere

(2010) H.A. Marquez-Santacruz et al.   GENETICS AND MOLECULAR RESEARCH

Phylogenetic relationships and diversity of  -rhizobia associated with Mimosa species grown in Sishuangbanna, China

(2010) X. Y. Liu et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Experimental factors affecting PCR-based estimates of microbial species richness and evenness

(2010) Anna Engelbrektson et al.   ISME Journal

Dynamics, Diversity and Function of Endophytic Siderophore-Producing Bacteria in Rice

(2010) Inés Loaces et al.   MICROBIAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Phaseolus vulgaris seed-borne endophytic community with novel bacterial species such as Rhizobium endophyticum sp. nov.

(2010) Aline López-López et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Compositional differences in particle-associated and free-living microbial assemblages from an extreme deep-ocean environment

(2010) Emiley A. Eloe et al.   Environmental Microbiology Reports

Endophytic bacteria in cacti seeds can improve the development of cactus seedlings

(2009) M. Esther Puente et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Regulatory Interactions Between Quorum-Sensing, Auxin, Cytokinin, and the Hrp Regulon in Relation to Gall Formation and Epiphytic Fitness ofPantoea agglomeranspv.gypsophilae

(2009) Laura Chalupowicz et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine

(2009) Marcus J. Claesson et al.   PLoS One

Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization

(2009) Stéphane Compant et al.   SOIL BIOLOGY & BIOCHEMISTRY

Green plants that feed on fungi: facts and questions about mixotrophy

(2009) Marc-André Selosse et al.   TRENDS IN PLANT SCIENCE

Genome Survey and Characterization of Endophytic Bacteria Exhibiting a Beneficial Effect on Growth and Development of Poplar Trees

(2008) S. Taghavi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Linking Sequence to Function in Soil Bacteria: Sequence-Directed Isolation of Novel Bacteria Contributing to Soilborne Plant Disease Suppression

(2008) M.-S. Benitez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Burkholderiaspp. are the most competitive symbionts ofMimosa, particularly under N-limited conditions

(2008) Geoffrey N. Elliott et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity of endophytic bacteria fromEucalyptusspecies seeds and colonization of seedlings byPantoea agglomerans

(2008) Anderson Ferreira et al.   FEMS MICROBIOLOGY LETTERS

Plant-growth-promoting rhizobacteria and arbuscular mycorrhizal fungi modify alleviation biochemical mechanisms in water-stressed plants

(2008) Josef Kohler et al.   FUNCTIONAL PLANT BIOLOGY

ENDOPHYTIC BACTERIA FROM SEEDS OFNICOTIANA TABACUMCAN REDUCE CADMIUM PHYTOTOXICITY

(2008) Chiara Mastretta et al.   INTERNATIONAL JOURNAL OF PHYTOREMEDIATION

Characterization of Herbaspirillum- and Limnobacter-Related Strains Isolated from Young Volcanic Deposits in Miyake-Jima Island, Japan

(2008) Hongsheng Lu et al.   MICROBES AND ENVIRONMENTS