Concordant geographic and genetic structure revealed by genotyping‐by‐sequencing in a New Zealand marine isopod

Minor allele frequency thresholds strongly affect population structure inference with genomic datasets

(2019) Ethan Linck et al.   Molecular Ecology Resources

Stacks 2: analytical methods for paired‐end sequencing improve RADseq‐based population genomics

(2019) Nicolas C. Rochette et al.   MOLECULAR ECOLOGY

Ultrarare variants drive substantial cis heritability of human gene expression

(2019) Ryan D. Hernandez et al.   NATURE GENETICS

dartr : An r package to facilitate analysis of SNP data generated from reduced representation genome sequencing

(2018) Bernd Gruber et al.   Molecular Ecology Resources

Antarctica’s ecological isolation will be broken by storm-driven dispersal and warming

(2018) Ceridwen I. Fraser et al.   Nature Climate Change

A tutorial on how not to over-interpret STRUCTURE and ADMIXTURE bar plots

(2018) Daniel J. Lawson et al.   Nature Communications

Contrasting gene flow at different spatial scales revealed by genotyping-by-sequencing in Isocladus armatus, a massively colour polymorphic New Zealand marine isopod

(2018) Sarah J. Wells et al.   PeerJ

RADseq dataset with 90% missing data fully resolves recent radiation of Petalidium (Acanthaceae) in the ultra-arid deserts of Namibia

(2017) Erin A. Tripp et al.   Ecology and Evolution

Life-history predicts past and present population connectivity in two sympatric sea stars

(2017) Jonathan B. Puritz et al.   Ecology and Evolution

Identifying patterns of dispersal, connectivity and selection in the sea scallop,Placopecten magellanicus,using RADseq-derived SNPs

(2016) Mallory Van Wyngaarden et al.   Evolutionary Applications

Estimating the Number of Subpopulations ( K ) in Structured Populations

(2016) Robert Verity et al.   GENETICS

Multiple transisthmian divergences, extensive cryptic diversity, occasional long-distance dispersal, and biogeographic patterns in a marine coastal isopod with an amphi-American distribution

(2016) Luis A. Hurtado et al.   Ecology and Evolution

Estimating the Number of Subpopulations ( K ) in Structured Populations

(2016) Robert Verity et al.   GENETICS

Differences in population connectivity of a benthic marine invertebrate Evechinus chloroticus (Echinodermata: Echinoidea) across large and small spatial scales

(2015) Meredith M. Nagel et al.   CONSERVATION GENETICS

Seven common mistakes in population genetics and how to avoid them

(2015) Patrick G. Meirmans   MOLECULAR ECOLOGY

MCMCpack: Markov Chain Monte Carlo inR

(2015) Andrew D. Martin et al.   Journal of Statistical Software

Testing for Hardy–Weinberg Proportions: Have We Lost the Plot?

(2014) Robin S. Waples   JOURNAL OF HEREDITY

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction

(2014) Zhian N. Kamvar et al.   PeerJ

StAMPP: an R package for calculation of genetic differentiation and structure of mixed-ploidy level populations

(2013) Luke W. Pembleton et al.   Molecular Ecology Resources

Contrasting Phylogeography of Sandy vs. Rocky Supralittoral Isopods in the Megadiverse and Geologically Dynamic Gulf of California and Adjacent Areas

(2013) Luis A. Hurtado et al.   PLoS One

marmap: A Package for Importing, Plotting and Analyzing Bathymetric and Topographic Data in R

(2013) Eric Pante et al.   PLoS One

Dispersal in Marine Organisms without a Pelagic Larval Phase

(2012) J. E. Winston   INTEGRATIVE AND COMPARATIVE BIOLOGY

The population genetic structure of the waratah anemone (Actinia tenebrosa) around New Zealand

(2012) AJ Veale et al.   NEW ZEALAND JOURNAL OF MARINE AND FRESHWATER RESEARCH

The genomics of speciation-with-gene-flow

(2012) Jeffrey L. Feder et al.   TRENDS IN GENETICS

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

The role of vicariance and dispersal on New Zealand's estuarine biodiversity: the case of Paracorophium (Crustacea: Amphipoda)

(2011) MATTHEW A. KNOX et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Effects of geography and life history traits on genetic differentiation in benthic marine fishes

(2011) Cynthia Riginos et al.   ECOGRAPHY

Applications and Implications of Neutral versus Non-neutral Markers in Molecular Ecology

(2011) Heather Kirk et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Complex genetic patterns in the mangrove wood-borer Sphaeroma terebrans Bate, 1866 (Isopoda, Crustacea, Sphaeromatidae) generated by shoreline topography and rafting dispersal

(2011) M. Baratti et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Low to moderate levels of genetic differentiation detected across the distribution of the New Zealand abalone, Haliotis iris

(2011) Margaret Will et al.   MARINE BIOLOGY

and D do not replace FST

(2011) MICHAEL C. WHITLOCK   MOLECULAR ECOLOGY

Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout

(2011) PAUL A. HOHENLOHE et al.   Molecular Ecology Resources

Establishment of new mutations under divergence and genome hitchhiking

(2011) J. L. Feder et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

Circumpolar dispersal by rafting in two subantarctic kelp-dwelling crustaceans

(2010) R Nikula et al.   MARINE ECOLOGY PROGRESS SERIES

Regional connectivity and coastal expansion: differentiating pre-border and post-border vectors for the invasive tunicateStyela clava

(2010) S. J. GOLDSTIEN et al.   MOLECULAR ECOLOGY

Phylogeography of Supralittoral Rocky Intertidal Ligia Isopods in the Pacific Region from Central California to Central Mexico

(2010) Luis A. Hurtado et al.   PLoS One

Geographical patterns of genetic structure in marine species with contrasting life histories

(2009) R. A. Pelc et al.   JOURNAL OF BIOGEOGRAPHY

Does life history predict past and current connectivity for rocky intertidal invertebrates across a marine biogeographic barrier?

(2009) D. J. AYRE et al.   MOLECULAR ECOLOGY

Divergent selection and heterogeneous genomic divergence

(2009) PATRIK NOSIL et al.   MOLECULAR ECOLOGY

Significant deviations from Hardy-Weinberg equilibrium caused by low levels of microsatellite genotyping errors

(2009) PHILLIP A. MORIN et al.   Molecular Ecology Resources

Inferring weak population structure with the assistance of sample group information

(2009) MELISSA J. HUBISZ et al.   Molecular Ecology Resources

Mitochondrial DNA evidence for deep genetic divergences in allopatric populations of the rocky intertidal isopod Ligia occidentalis from the eastern Pacific

(2009) Therese A. Markow et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Evaluation of Biogeographic Classification Schemes for Conservation Planning: Application to New Zealand's Coastal Marine Environment

(2008) NICK T. SHEARS et al.   CONSERVATION BIOLOGY

Cryptic speciation in a benthic isopod from Patagonian and Falkland Island waters and the impact of glaciations on its population structure

(2008) Florian Leese et al.   Frontiers in Zoology

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Identifying Selected Regions from Heterozygosity and Divergence Using a Light-Coverage Genomic Dataset from Two Human Populations

(2008) Taras K. Oleksyk et al.   PLoS One