Variability of an Early Developmental Cell Population Underlies Stochastic Laterality Defects

Characterization of the Genetic Architecture Underlying Eye Size Variation Within Drosophila melanogaster and Drosophila simulans

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VolcaNoseR is a web app for creating, exploring, labeling and sharing volcano plots

(2020) Joachim Goedhart et al.   Scientific Reports

Genetic compensation triggered by mutant mRNA degradation

(2019) Mohamed A. El-Brolosy et al.   NATURE

scruff: an R/Bioconductor package for preprocessing single-cell RNA-sequencing data

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Altering the Temporal Regulation of One Transcription Factor Drives Evolutionary Trade-Offs between Head Sensory Organs

(2019) Ariane Ramaekers et al.   DEVELOPMENTAL CELL

Multi-scale imaging and analysis identify pan-embryo cell dynamics of germlayer formation in zebrafish

(2019) Gopi Shah et al.   Nature Communications

A Wilson cell origin for Kupffer's vesicle in the zebrafish

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Whole-organism clone tracing using single-cell sequencing

(2018) Anna Alemany et al.   NATURE

Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain

(2018) Bushra Raj et al.   NATURE BIOTECHNOLOGY

Simultaneous lineage tracing and cell-type identification using CRISPR–Cas9-induced genetic scars

(2018) Bastiaan Spanjaard et al.   NATURE BIOTECHNOLOGY

Asymmetric ommatidia count and behavioural lateralization in the ant Temnothorax albipennis

(2018) Edmund R. Hunt et al.   Scientific Reports

Is sporadic Alzheimer′s disease a developmental disorder?

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Split top: a maternal cathepsin B that regulates dorsoventral patterning and morphogenesis

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Morphogen rules: design principles of gradient-mediated embryo patterning

(2015) J. Briscoe et al.   DEVELOPMENT

The V-ATPase accessory protein Atp6ap1b mediates dorsal forerunner cell proliferation and left–right asymmetry in zebrafish

(2015) Jason J. Gokey et al.   DEVELOPMENTAL BIOLOGY

Kupffer's vesicle size threshold for robust left-right patterning of the zebrafish embryo

(2015) Jason J. Gokey et al.   DEVELOPMENTAL DYNAMICS

Current Concepts on the Pathogenesis of Type 1 Diabetes—Considerations for Attempts to Prevent and Reverse the Disease

(2015) Mark A. Atkinson et al.   DIABETES CARE

An ensemble-averaged, cell density-based digital model of zebrafish embryo development derived from light-sheet microscopy data with single-cell resolution

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Simultaneous high-resolution detection of multiple transcripts combined with localization of proteins in whole-mount embryos

(2014) Theresa Gross-Thebing et al.   BMC BIOLOGY

Left-Right Organizer Flow Dynamics: How Much Cilia Activity Reliably Yields Laterality?

(2014) Pedro Sampaio et al.   DEVELOPMENTAL CELL

A Nodal-independent and tissue-intrinsic mechanism controls heart-looping chirality

(2013) Emily S. Noël et al.   Nature Communications

STAR: ultrafast universal RNA-seq aligner

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Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Predicting mutation outcome from early stochastic variation in genetic interaction partners

(2011) Alejandro Burga et al.   NATURE

The Rho kinase Rock2b establishes anteroposterior asymmetry of the ciliated Kupffer's vesicle in zebrafish

(2010) G. Wang et al.   DEVELOPMENT

Zebrafish Nkd1 promotes Dvl degradation and is required for left–right patterning

(2010) Igor Schneider et al.   DEVELOPMENTAL BIOLOGY

Variability in gene expression underlies incomplete penetrance

(2010) Arjun Raj et al.   NATURE

ZFIN: enhancements and updates to the zebrafish model organism database

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

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Robust Generation and Decoding of Morphogen Gradients

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Cell Lineages and the Logic of Proliferative Control

(2009) Arthur D Lander et al.   PLOS BIOLOGY

Origin and shaping of the laterality organ in zebrafish

(2008) P. Oteiza et al.   DEVELOPMENT

Fluid dynamics in zebrafish Kupffer's vesicle

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High-resolution in situ hybridization to whole-mount zebrafish embryos

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