Accurate protein structure prediction with hydroxyl radical protein footprinting data
出版年份 2021 全文链接
标题
Accurate protein structure prediction with hydroxyl radical protein footprinting data
作者
关键词
-
出版物
Nature Communications
Volume 12, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-01-13
DOI
10.1038/s41467-020-20549-7
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Mass Spectrometry-Based Protein Footprinting for Higher-Order Structure Analysis: Fundamentals and Applications
- (2020) Xiaoran Roger Liu et al. CHEMICAL REVIEWS
- Macromolecular modeling and design in Rosetta: recent methods and frameworks
- (2020) Julia Koehler Leman et al. NATURE METHODS
- Utility of Covalent Labeling Mass Spectrometry Data in Protein Structure Prediction with Rosetta
- (2019) Melanie L. Aprahamian et al. Journal of Chemical Theory and Computation
- Relative interfacial cleavage energetics of protein complexes revealed by surface collisions
- (2019) Sophie R. Harvey et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Covalent Labeling with Diethylpyrocarbonate: Sensitive to the Residue Microenvironment, Providing Improved Analysis of Protein Higher Order Structure by Mass Spectrometry
- (2019) Patanachai Limpikirati et al. ANALYTICAL CHEMISTRY
- Predicting Protein Complex Structure from Surface-Induced Dissociation Mass Spectrometry Data
- (2019) Justin T. Seffernick et al. ACS Central Science
- An Integrated Approach for Determining a Protein–Protein Binding Interface in Solution and an Evaluation of Hydrogen–Deuterium Exchange Kinetics for Adjudicating Candidate Docking Models
- (2019) Mengru Mira Zhang et al. ANALYTICAL CHEMISTRY
- Using NMR Chemical Shifts and Cryo-EM Density Restraints in Iterative Rosetta-MD Protein Structure Refinement
- (2019) Sumudu P. Leelananda et al. Journal of Chemical Information and Modeling
- Rosetta Protein Structure Prediction from Hydroxyl Radical Protein Footprinting Mass Spectrometry Data
- (2018) Melanie L. Aprahamian et al. ANALYTICAL CHEMISTRY
- Iterative Molecular Dynamics–Rosetta Membrane Protein Structure Refinement Guided by Cryo-EM Densities
- (2017) Sumudu P. Leelananda et al. Journal of Chemical Theory and Computation
- The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design
- (2017) Rebecca F. Alford et al. Journal of Chemical Theory and Computation
- Diabetes reversal by inhibition of the low-molecular-weight tyrosine phosphatase
- (2017) Stephanie M Stanford et al. Nature Chemical Biology
- Quantitative Protein Topography Measurements by High Resolution Hydroxyl Radical Protein Footprinting Enable Accurate Molecular Model Selection
- (2017) Boer Xie et al. Scientific Reports
- Protocols for Molecular Modeling with Rosetta3 and RosettaScripts
- (2016) Brian J. Bender et al. BIOCHEMISTRY
- Accurate de novo design of hyperstable constrained peptides
- (2016) Gaurav Bhardwaj et al. NATURE
- Carbene footprinting accurately maps binding sites in protein–ligand and protein–protein interactions
- (2016) Lucio Manzi et al. Nature Communications
- Quantitative Mapping of Protein Structure by Hydroxyl Radical Footprinting-Mediated Structural Mass Spectrometry: A Protection Factor Analysis
- (2015) Wei Huang et al. BIOPHYSICAL JOURNAL
- Perspective: Watching low-frequency vibrations of water in biomolecular recognition by THz spectroscopy
- (2015) Yao Xu et al. JOURNAL OF CHEMICAL PHYSICS
- Quantitative Protein Topography Analysis and High-Resolution Structure Prediction Using Hydroxyl Radical Labeling and Tandem-Ion Mass Spectrometry (MS)
- (2015) Parminder Kaur et al. MOLECULAR & CELLULAR PROTEOMICS
- Advances in radical probe mass spectrometry for protein footprinting in chemical biology applications
- (2014) Simin D. Maleknia et al. CHEMICAL SOCIETY REVIEWS
- Analysis of Nidogen-1/Laminin γ1 Interaction by Cross-Linking, Mass Spectrometry, and Computational Modeling Reveals Multiple Binding Modes
- (2014) Philip Lössl et al. PLoS One
- Mass Spectrometry Coupled Experiments and Protein Structure Modeling Methods
- (2013) Jaewoo Pi et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Cross-Link Guided Molecular Modeling with ROSETTA
- (2013) Abdullah Kahraman et al. PLoS One
- High-Resolution Comparative Modeling with RosettaCM
- (2013) Yifan Song et al. STRUCTURE
- Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ1 and χ2 Dihedral Angles
- (2012) Robert B. Best et al. Journal of Chemical Theory and Computation
- Putting the Pieces Together: Integrative Modeling Platform Software for Structure Determination of Macromolecular Assemblies
- (2012) Daniel Russel et al. PLOS BIOLOGY
- Mass spectrometry: come of age for structural and dynamical biology
- (2011) Justin LP Benesch et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Modeling of the DNA-binding site of yeast Pms1 by mass spectrometry
- (2011) Allison N. Schorzman et al. DNA REPAIR
- RosettaScripts: A Scripting Language Interface to the Rosetta Macromolecular Modeling Suite
- (2011) Sarel J. Fleishman et al. PLoS One
- Algorithm discovery by protein folding game players
- (2011) F. Khatib et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Hydrogen exchange mass spectrometry for studying protein structure and dynamics
- (2010) Lars Konermann et al. CHEMICAL SOCIETY REVIEWS
- Probabilistic cross-link analysis and experiment planning for high-throughput elucidation of protein structure
- (2004) Xiaoduan Ye et al. PROTEIN SCIENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search