The Compact Macronuclear Genome of the Ciliate Halteria grandinella: A Transcriptome-Like Genome with 23,000 Nanochromosomes
出版年份 2021 全文链接
标题
The Compact Macronuclear Genome of the Ciliate Halteria grandinella: A Transcriptome-Like Genome with 23,000 Nanochromosomes
作者
关键词
-
出版物
mBio
Volume 12, Issue 1, Pages -
出版商
American Society for Microbiology
发表日期
2021-01-25
DOI
10.1128/mbio.01964-20
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Single-Cell Transcriptomics Reveal a Correlation between Genome Architecture and Gene Family Evolution in Ciliates
- (2020) Ying Yan et al. mBio
- ADFinder: accurate detection of programmed DNA elimination using NGS high-throughput sequencing data
- (2020) Weibo Zheng et al. BIOINFORMATICS
- The completed macronuclear genome of a model ciliate Tetrahymena thermophila and its application in genome scrambling and copy number analyses
- (2020) Yalan Sheng et al. Science China-Life Sciences
- Cyclin Cyc2p is required for micronuclear bouquet formation in Tetrahymena thermophila
- (2019) Jing Xu et al. Science China-Life Sciences
- Further analyses of variation of ribosome DNA copy number and polymorphism in ciliates provide insights relevant to studies of both molecular ecology and phylogeny
- (2019) Yurui Wang et al. Science China-Life Sciences
- Identification of a DNA N6-Adenine Methyltransferase Complex and Its Impact on Chromatin Organization
- (2019) Leslie Y. Beh et al. CELL
- Genome analyses of the new model protist Euplotes vannus focusing on genome rearrangement and resistance to environmental stressors
- (2019) Xiao Chen et al. Molecular Ecology Resources
- Environmentally induced plasticity of programmed DNA elimination boosts somatic variability in Paramecium tetraurelia
- (2019) Valerio Vitali et al. GENOME RESEARCH
- rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data
- (2019) Elena Bushmanova et al. GigaScience
- A distinct class of eukaryotic MT-A70 methyltransferases maintain symmetric DNA N6-adenine methylation at the ApT dinucleotides as an epigenetic mark associated with transcription
- (2019) Yuanyuan Wang et al. NUCLEIC ACIDS RESEARCH
- EOGD: the Euplotes octocarinatus genome database
- (2018) Ruan-lin Wang et al. BMC GENOMICS
- Insights into an Extensively Fragmented Eukaryotic Genome: De Novo Genome Sequencing of the Multinuclear Ciliate Uroleptopsis citrina
- (2018) Weibo Zheng et al. Genome Biology and Evolution
- “Twisted Tales: Insights into Genome Diversity of Ciliates Using Single-Cell ‘omics”
- (2018) Xyrus X Maurer-Alcalá et al. Genome Biology and Evolution
- Small RNA-mediated regulation of DNA dosage in the ciliate Oxytricha
- (2017) Jaspreet S. Khurana et al. RNA
- Genetic Codes with No Dedicated Stop Codon: Context-Dependent Translation Termination
- (2016) Estienne Carl Swart et al. CELL
- High frequency of +1 programmed ribosomal frameshifting in Euplotes octocarinatus
- (2016) Ruanlin Wang et al. Scientific Reports
- Combinatorial DNA rearrangement facilitates the origin of new genes in ciliates
- (2015) Xiao Chen et al. Genome Biology and Evolution
- : a database of ciliate genome rearrangements
- (2015) Jonathan Burns et al. NUCLEIC ACIDS RESEARCH
- Analyses of Alternatively Processed Genes in Ciliates Provide Insights into the Origins of Scrambled Genomes and May Provide a Mechanism for Speciation
- (2015) Feng Gao et al. mBio
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Genome-Wide Linkage-Disequilibrium Profiles from Single Individuals
- (2014) Michael Lynch et al. GENETICS
- The Draft Assembly of the Radically Organized Stylonychia lemnae Macronuclear Genome
- (2014) Samuel H. Aeschlimann et al. Genome Biology and Evolution
- Population-Genetic Inference from Pooled-Sequencing Data
- (2014) Michael Lynch et al. Genome Biology and Evolution
- The MaSuRCA genome assembler
- (2013) Aleksey V. Zimin et al. BIOINFORMATICS
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- Spliced DNA Sequences in the Paramecium Germline: Their Properties and Evolutionary Potential
- (2013) Francesco Catania et al. Genome Biology and Evolution
- The Oxytricha trifallax Macronuclear Genome: A Complex Eukaryotic Genome with 16,000 Tiny Chromosomes
- (2013) Estienne C. Swart et al. PLOS BIOLOGY
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control
- (2011) Robert S Coyne et al. GENOME BIOLOGY
- Alternative processing of scrambled genes generates protein diversity in the ciliate Chilodonella uncinata
- (2010) Laura A. Katz et al. JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION
- ParameciumDB in 2011: new tools and new data for functional and comparative genomics of the model ciliate Paramecium tetraurelia
- (2010) O. Arnaiz et al. NUCLEIC ACIDS RESEARCH
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- MEME SUITE: tools for motif discovery and searching
- (2009) T. L. Bailey et al. NUCLEIC ACIDS RESEARCH
- Using native and syntenically mapped cDNA alignments to improve de novo gene finding
- (2008) Mario Stanke et al. BIOINFORMATICS
- Macronuclear genome structure of the ciliate Nyctotherus ovalis: Single-gene chromosomes and tiny introns
- (2008) Guénola Ricard et al. BMC GENOMICS
- Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
- (2008) Robert S Coyne et al. BMC GENOMICS
- Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: A somatic view of the germline
- (2008) L. Duret et al. GENOME RESEARCH
- Translational control of intron splicing in eukaryotes
- (2008) Olivier Jaillon et al. NATURE
- NCBI BLAST: a better web interface
- (2008) M. Johnson et al. NUCLEIC ACIDS RESEARCH
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started