A distinct class of eukaryotic MT-A70 methyltransferases maintain symmetric DNA N6-adenine methylation at the ApT dinucleotides as an epigenetic mark associated with transcription

Cyclin Cyc2p is required for micronuclear bouquet formation in Tetrahymena thermophila

(2019) Jing Xu et al.   Science China-Life Sciences

Further analyses of variation of ribosome DNA copy number and polymorphism in ciliates provide insights relevant to studies of both molecular ecology and phylogeny

(2019) Yurui Wang et al.   Science China-Life Sciences

RNAi-dependent Polycomb repression controls transposable elements in Tetrahymena

(2019) Xiaolu Zhao et al.   GENES & DEVELOPMENT

Identification of a DNA N6-Adenine Methyltransferase Complex and Its Impact on Chromatin Organization

(2019) Leslie Y. Beh et al.   CELL

Genome analyses of the new model protist Euplotes vannus focusing on genome rearrangement and resistance to environmental stressors

(2019) Xiao Chen et al.   Molecular Ecology Resources

DNA N 6 -Adenine Methylation in Arabidopsis thaliana

(2018) Zhe Liang et al.   DEVELOPMENTAL CELL

N 6 -Methyladenine DNA Modification in the Human Genome

(2018) Chuan-Le Xiao et al.   MOLECULAR CELL

GPSit: An automated method for evolutionary analysis of nonculturable ciliated microeukaryotes

(2018) Xiao Chen et al.   Molecular Ecology Resources

DNA methylation on N6-adenine in lepidopteran Bombyx mori

(2018) Xiaoyan Wang et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

N-methyladenine DNA Modification in Glioblastoma

(2018) Qi Xie et al.   CELL

N6-methyldeoxyadenine is a transgenerational epigenetic signal for mitochondrial stress adaptation

(2018) Chengchuan Ma et al.   NATURE CELL BIOLOGY

N 6 -methyladenine DNA modification in the unicellular eukaryotic organism Tetrahymena thermophila

(2017) Yuanyuan Wang et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

Widespread adenine N6-methylation of active genes in fungi

(2017) Stephen J Mondo et al.   NATURE GENETICS

A germline-limited piggyBac transposase gene is required for precise excision in Tetrahymena genome rearrangement

(2017) Lifang Feng et al.   NUCLEIC ACIDS RESEARCH

N6-adenine DNA methylation is associated with the linker DNA of H2A.Z-containing well-positioned nucleosomes in Pol II-transcribed genes in Tetrahymena

(2017) Yuanyuan Wang et al.   NUCLEIC ACIDS RESEARCH

DNA N6-methyladenine is dynamically regulated in the mouse brain following environmental stress

(2017) Bing Yao et al.   Nature Communications

Structural Basis for Cooperative Function of Mettl3 and Mettl14 Methyltransferases

(2016) Ping Wang et al.   MOLECULAR CELL

DNA methylation on N6-adenine in mammalian embryonic stem cells

(2016) Tao P. Wu et al.   NATURE

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Functional architecture of the Reb1-Ter complex ofSchizosaccharomyces pombe

(2016) Rahul Jaiswal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Histone methyltransferase TXR1 is required for both H3 and H3.3 lysine 27 methylation in the well-known ciliated protist Tetrahymena thermophila

(2016) Xiaolu Zhao et al.   Science China-Life Sciences

Enzymatic and chemical mapping of nucleosome distribution in purified micro- and macronuclei of the ciliated model organism, Tetrahymena thermophila

(2016) Xiao Chen et al.   Science China-Life Sciences

Abundant DNA 6mA methylation during early embryogenesis of zebrafish and pig

(2016) Jianzhao Liu et al.   Nature Communications

Adenine methylation in eukaryotes: Apprehending the complex evolutionary history and functional potential of an epigenetic modification

(2015) Lakshminarayan M. Iyer et al.   BIOESSAYS

DNA Methylation on N6-Adenine in C. elegans

(2015) Eric Lieberman Greer et al.   CELL

N6-Methyladenine DNA Modification in Drosophila

(2015) Guoqiang Zhang et al.   CELL

N6-Methyldeoxyadenosine Marks Active Transcription Start Sites in Chlamydomonas

(2015) Ye Fu et al.   CELL

Identification of methylated deoxyadenosines in vertebrates reveals diversity in DNA modifications

(2015) Magdalena J Koziol et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Identification of methylated deoxyadenosines in vertebrates reveals diversity in DNA modifications

(2015) Magdalena J Koziol et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

circlize implements and enhances circular visualization in R

(2014) Zuguang Gu et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Modeling nucleosome position distributions from experimental nucleosome positioning maps

(2013) Robert Schöpflin et al.   BIOINFORMATICS

Using GBrowse 2.0 to visualize and share next-generation sequence data

(2013) L. D. Stein   BRIEFINGS IN BIOINFORMATICS

Impaired replication elongation in Tetrahymena mutants deficient in histone H3 Lys 27 monomethylation

(2013) S. Gao et al.   GENES & DEVELOPMENT

Structural Basis of Membrane Trafficking by Rab Family Small G Protein

(2013) Hyun Park   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Ascorbic Acid Enhances Tet-Mediated 5-Methylcytosine Oxidation and Promotes DNA Demethylation in Mammals

(2013) Ruichuan Yin et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Quantitative Dissection and Stoichiometry Determination of the Human SET1/MLL Histone Methyltransferase Complexes

(2013) R. van Nuland et al.   MOLECULAR AND CELLULAR BIOLOGY

A METTL3–METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation

(2013) Jianzhao Liu et al.   Nature Chemical Biology

The Oxytricha trifallax Macronuclear Genome: A Complex Eukaryotic Genome with 16,000 Tiny Chromosomes

(2013) Estienne C. Swart et al.   PLOS BIOLOGY

Mechanistic details of the DNA recognition by the Dnmt1 DNA methyltransferase

(2012) Pavel Bashtrykov et al.   FEBS LETTERS

Transcriptome Analysis of the Model Protozoan, Tetrahymena thermophila, Using Deep RNA Sequencing

(2012) Jie Xiong et al.   PLoS One

Strand-asymmetric endogenous Tetrahymena small RNA production requires a previously uncharacterized uridylyltransferase protein partner

(2012) K. B. Talsky et al.   RNA

Tetrahymena genome database Wiki: a community-maintained model organism database

(2012) N. A. Stover et al.   Database-The Journal of Biological Databases and Curation

Gene Network Landscape of the Ciliate Tetrahymena thermophila

(2011) Jie Xiong et al.   PLoS One

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Microarray Analyses of Gene Expression during the Tetrahymena thermophila Life Cycle

(2009) Wei Miao et al.   PLoS One

High efficiency transformation of Tetrahymena using a codon-optimized neomycin resistance gene

(2008) Kazufumi Mochizuki   GENE

Study of an RNA helicase implicates small RNA-noncoding RNA interactions in programmed DNA elimination in Tetrahymena

(2008) L. Aronica et al.   GENES & DEVELOPMENT

DNA double-strand breaks, but not crossovers, are required for the reorganization of meiotic nuclei in Tetrahymena

(2008) K. Mochizuki et al.   JOURNAL OF CELL SCIENCE