Genetics and Genomics of African Rice (Oryza glaberrima Steud) Domestication

Extreme genetic signatures of local adaptation during Lotus japonicus colonization of Japan

(2020) Niraj Shah et al.   Nature Communications

Convergent Evolution of the Seed Shattering Trait

(2019) Valerio Di Vittori et al.   Genes

The complex geography of domestication of the African rice Oryza glaberrima

(2019) Jae Young Choi et al.   PLoS Genetics

Origins and geographic diversification of African rice (Oryza glaberrima)

(2019) Margaretha A. Veltman et al.   PLoS One

The Genomics of Oryza Species Provides Insights into Rice Domestication and Heterosis

(2019) Erwang Chen et al.   Annual Review of Plant Biology

Copy Number Variation in Domestication

(2019) Zoe N. Lye et al.   TRENDS IN PLANT SCIENCE

Evolutionary Insights into the Nature of Plant Domestication

(2019) Michael D. Purugganan   CURRENT BIOLOGY

Genetic Interactions Among Ghd7, Ghd8, OsPRR37 and Hd1 Contribute to Large Variation in Heading Date in Rice

(2019) Bo Zhang et al.   Rice

Advances in Molecular Genetics and Genomics of African Rice (Oryza glaberrima Steud)

(2019) Peterson W. Wambugu et al.   Plants-Basel

Australian Wild Rice Populations: A Key Resource for Global Food Security

(2019) Robert J. Henry   Frontiers in Plant Science

The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes

(2018) Philippe Cubry et al.   CURRENT BIOLOGY

Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

(2018) Joshua C. Stein et al.   NATURE GENETICS

The domestication of plant architecture in African rice

(2018) Min Hu et al.   PLANT JOURNAL

Domestication Genomics: Untangling the Complex History of African Rice

(2018) Samantha J. Snodgrass et al.   CURRENT BIOLOGY

Detection and Classification of Hard and Soft Sweeps from Unphased Genotypes by Multilocus Genotype Identity

(2018) Alexandre M. Harris et al.   GENETICS

Development of species diagnostic SNP markers for quality control genotyping in four rice (Oryza L.) species

(2018) Marie Noelle Ndjiondjop et al.   MOLECULAR BREEDING

Comparisons of molecular diversity indices, selective sweeps and population structure of African rice with its wild progenitor and Asian rice

(2018) Marie Noelle Ndjiondjop et al.   THEORETICAL AND APPLIED GENETICS

Deletions linked to PROG1 gene participate in plant architecture domestication in Asian and African rice

(2018) Yongzhen Wu et al.   Nature Communications

Origin and evolution of qingke barley in Tibet

(2018) Xingquan Zeng et al.   Nature Communications

Contrasting patterns of neutral and functional genetic diversity in stable and disturbed environments

(2018) Yeşerin Yıldırım et al.   Ecology and Evolution

Whole-Genome Analysis of Candidate genes Associated with Seed Size and Weight in Sorghum bicolor Reveals Signatures of Artificial Selection and Insights into Parallel Domestication in Cereal Crops

(2017) Yongfu Tao et al.   Frontiers in Plant Science

Genetic Variation and Population Structure of Oryza glaberrima and Development of a Mini-Core Collection Using DArTseq

(2017) Marie-Noelle Ndjiondjop et al.   Frontiers in Plant Science

Evidence for mid-Holocene rice domestication in the Americas

(2017) Lautaro Hilbert et al.   Nature Ecology & Evolution

Domestication history and geographical adaptation inferred from a SNP map of African rice

(2016) Rachel S Meyer et al.   NATURE GENETICS

A single base change explains the independent origin of and selection for the nonshattering gene in African rice domestication

(2016) Khin Thanda Win et al.   NEW PHYTOLOGIST

Loss of function atRAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice

(2016) Kanako Bessho-Uehara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Parallel Domestication of theHeading Date 1Gene in Cereals

(2015) Huanhuan Liu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative Population Genomics Reveals Strong Divergence and Infrequent Introgression between Asian and African Rice

(2015) Xuehui Huang et al.   Molecular Plant

Fine mapping of qGW1, a major QTL for grain weight in sorghum

(2015) Lijie Han et al.   THEORETICAL AND APPLIED GENETICS

Relationships of wild and domesticated rices (Oryza AA genome species) based upon whole chloroplast genome sequences

(2015) Peterson W. Wambugu et al.   Scientific Reports

Convergent Loss of Awn in Two Cultivated Rice Species Oryza sativa and Oryza glaberrima Is Caused by Mutations in Different Loci

(2015) Tomoyuki Furuta et al.   G3-Genes Genomes Genetics

Rice domestication occurred through single origin and multiple introgressions

(2015) Xuehui Huang et al.   Nature Plants

The Molecular Basis of Phenotypic Convergence

(2014) Erica Bree Rosenblum et al.   Annual Review of Ecology Evolution and Systematics

Molecular Genetic Dissection of Quantitative Trait Loci Regulating Rice Grain Size

(2014) Jianru Zuo et al.   Annual Review of Genetics

Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima)

(2014) Benoit Nabholz et al.   MOLECULAR ECOLOGY

An evolutionary genomic tale of two rice species

(2014) Michael D Purugganan   NATURE GENETICS

The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication

(2014) Muhua Wang et al.   NATURE GENETICS

Processes Underpinning Development and Maintenance of Diversity in Rice in West Africa: Evidence from Combining Morphological and Molecular Markers

(2014) Alfred Mokuwa et al.   PLoS One

Rapid diversification of fiveOryzaAA genomes associated with rice adaptation

(2014) Qun-Jie Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An extensive analysis of the African rice genetic diversity through a global genotyping

(2014) Julie Orjuela et al.   THEORETICAL AND APPLIED GENETICS

A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica)

(2013) Guanqing Jia et al.   NATURE GENETICS

Evolution of crop species: genetics of domestication and diversification

(2013) Rachel S. Meyer et al.   NATURE REVIEWS GENETICS

An-1 Encodes a Basic Helix-Loop-Helix Protein That Regulates Awn Development, Grain Size, and Grain Number in Rice

(2013) J. Luo et al.   PLANT CELL

Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution

(2013) Jinfeng Chen et al.   Nature Communications

Crop plants as models for understanding plant adaptation and diversification

(2013) Kenneth M. Olsen et al.   Frontiers in Plant Science

Evolution of the African Rice: A Historical and Biological Perspective

(2012) N. M. Nayar   CROP SCIENCE

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

Parallel domestication of the Shattering1 genes in cereals

(2012) Zhongwei Lin et al.   NATURE GENETICS

Genetic Control of Seed Shattering in Rice by the APETALA2 Transcription Factor SHATTERING ABORTION1

(2012) Y. Zhou et al.   PLANT CELL

Genetic bases of rice grain shape: so many genes, so little known

(2012) Rongyu Huang et al.   TRENDS IN PLANT SCIENCE

Introgression lines of rice (Oryza sativa L.) carrying a donor genome from the wild species, O. glumaepatula Steud. and O. meridionalis Ng

(2011) Atsushi Yoshimura et al.   BREEDING SCIENCE

Crop genomics: advances and applications

(2011) Peter L. Morrell et al.   NATURE REVIEWS GENETICS

Distinct evolutionary patterns of Oryza glaberrima deciphered by genome sequencing and comparative analysis

(2011) Hiroaki Sakai et al.   PLANT JOURNAL

Molecular evidence for a single evolutionary origin of domesticated rice

(2011) J. Molina et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic diversity and domestication history of African rice (Oryza glaberrima) as inferred from multiple gene sequences

(2011) Zhi-Ming Li et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

(2011) Keyan Zhao et al.   Nature Communications

Massive gene losses in Asian cultivated rice unveiled by comparative genome analysis

(2010) Hiroaki Sakai et al.   BMC GENOMICS

African Rice (Oryza glaberrima Steud.): Lost Crop of the Enslaved Africans Discovered in Suriname1

(2010) Tinde Van Andel   ECONOMIC BOTANY

The molecular basis of white pericarps in African domesticated rice: novel mutations at the Rc gene

(2010) B. L. GROSS et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Orthologous Comparisons of the Hd1 Region across Genera Reveal Hd1 Gene Lability within Diploid Oryza Species and Disruptions to Microsynteny in Sorghum

(2010) A. Sanyal et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

A Genetic Framework for Grain Size and Shape Variation in Wheat

(2010) Vasilis C. Gegas et al.   PLANT CELL

The nature of selection during plant domestication

(2009) Michael D. Purugganan et al.   NATURE

Natural variation at the DEP1 locus enhances grain yield in rice

(2009) Xianzhong Huang et al.   NATURE GENETICS

Inactivation of the CTD phosphatase-like geneOsCPL1enhances the development of the abscission layer and seed shattering in rice

(2009) Hyeonso Ji et al.   PLANT JOURNAL

Evidence for the Emergence of New Rice Types of Interspecific Hybrid Origin in West African Farmers' Fields

(2009) Edwin Nuijten et al.   PLoS One

Control of a key transition from prostrate to erect growth in rice domestication

(2008) Lubin Tan et al.   NATURE GENETICS

Genetic approaches to crop improvement: responding to environmental and population changes

(2008) Shin Takeda et al.   NATURE REVIEWS GENETICS

Dynamic Evolution of Oryza Genomes Is Revealed by Comparative Genomic Analysis of a Genus-Wide Vertical Data Set

(2008) J. S.S. Ammiraju et al.   PLANT CELL

The evolving story of rice evolution

(2008) Duncan A. Vaughan et al.   PLANT SCIENCE

The genetic expectations of a protracted model for the origins of domesticated crops

(2008) R. G. Allaby et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A natural mutation in rc reverts white-rice-pericarp to red and results in a new, dominant, wild-type allele: Rc-g

(2008) Steven A. Brooks et al.   THEORETICAL AND APPLIED GENETICS