An extensive analysis of the African rice genetic diversity through a global genotyping

Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima)

(2014) Benoit Nabholz et al.   MOLECULAR ECOLOGY

A Recessive Resistance toRice yellow mottle virusIs Associated with a Rice Homolog of theCPR5Gene, a Regulator of Active Defense Mechanisms

(2013) Julie Orjuela et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Phylogeography of Asian wild rice,Oryza rufipogon: a genome-wide view

(2012) PU HUANG et al.   MOLECULAR ECOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

High-throughput single nucleotide polymorphism genotyping for breeding applications in rice using the BeadXpress platform

(2011) Michael J. Thomson et al.   MOLECULAR BREEDING

Genetic diversity and domestication history of African rice (Oryza glaberrima) as inferred from multiple gene sequences

(2011) Zhi-Ming Li et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

(2011) Keyan Zhao et al.   Nature Communications

Two Evolutionary Histories in the Genome of Rice: the Roles of Domestication Genes

(2011) Ziwen He et al.   PLoS Genetics

Flapjack--graphical genotype visualization

(2010) I. Milne et al.   BIOINFORMATICS

Identification of a Rice stripe necrosis virus resistance locus and yield component QTLs using Oryza sativa × O. glaberrima introgression lines

(2010) Andrés Gutiérrez et al.   BMC PLANT BIOLOGY

A Genetic Model for the Female Sterility Barrier Between Asian and African Cultivated Rice Species

(2010) A. Garavito et al.   GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Identification of a second major resistance gene to Rice yellow mottle virus, RYMV2, in the African cultivated rice species, O. glaberrima

(2010) Deless Thiémélé et al.   THEORETICAL AND APPLIED GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Evidence for the Emergence of New Rice Types of Interspecific Hybrid Origin in West African Farmers' Fields

(2009) Edwin Nuijten et al.   PLoS One

The evolving story of rice evolution

(2008) Duncan A. Vaughan et al.   PLANT SCIENCE