H3K4 trimethylation dynamics impact diverse developmental and environmental responses in plants

Broad domains of histone H3 lysine 4 trimethylation in transcriptional regulation and disease

(2020) Shinae Park et al.   FEBS Journal

The function of the histone lysine methylation related SET domain group (SDG) proteins in plants

(2020) Huiyan Zhou et al.   PROTEIN SCIENCE

The Chromatin Factor HNI9 and ELONGATED HYPOCOTYL 5 Maintain ROS Homeostasis under High Nitrogen Provision

(2019) Fanny Bellegarde et al.   PLANT PHYSIOLOGY

The Histone H3K4 Demethylase JMJ16 Represses Leaf Senescence in Arabidopsis

(2019) Peng Liu et al.   PLANT CELL

Arabidopsis histone H3K4 demethylase JMJ 17 functions in dehydration stress response

(2019) Shuangzhan Huang et al.   NEW PHYTOLOGIST

Salt-Responsive Genes Are Differentially Regulated At The Chromatin Levels Between Seedlings And Roots In Rice

(2019) Dongyang Zheng et al.   PLANT AND CELL PHYSIOLOGY

JMJ14 encoded H3K4 demethylase modulates immune responses by regulating defence gene expression and pipecolic acid levels

(2019) Dan Li et al.   NEW PHYTOLOGIST

Histone modifications form epigenetic regulatory networks to regulate abiotic stress response

(2019) Minoru Ueda et al.   PLANT PHYSIOLOGY

SIP1 participates in regulation of flowering time in rice by recruiting OsTrx1 to Ehd1

(2018) Pengfei Jiang et al.   NEW PHYTOLOGIST

Epigenetic regulation of anthocyanin biosynthesis by an antagonistic interaction between H2A.Z and H3K4me3

(2018) Hanyang Cai et al.   NEW PHYTOLOGIST

Rpd3L HDAC links H3K4me3 to transcriptional repression memory

(2018) Bo Bae Lee et al.   NUCLEIC ACIDS RESEARCH

Dual recognition of H3K4me3 and H3K27me3 by a plant histone reader SHL

(2018) Shuiming Qian et al.   Nature Communications

The role of plant epigenetics in biotic interactions

(2018) Conchita Alonso et al.   NEW PHYTOLOGIST

OsJMJ703, a rice histone demethylase gene, plays key roles in plant development and responds to drought stress

(2018) Tao Song et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

ARABIDOPSIS TRITHORAX 4 Facilitates Shoot Identity Establishment during the Plant Regeneration Process

(2018) Kyounghee Lee et al.   PLANT AND CELL PHYSIOLOGY

Tri-methylation of histone H3 lysine 4 facilitates gene expression in ageing cells

(2018) Cristina Cruz et al.   eLife

H2A.Z Represses Gene Expression by Modulating Promoter Nucleosome Structure and Enhancer Histone Modifications in Arabidopsis

(2017) Xiaozhuan Dai et al.   Molecular Plant

SET DOMAIN GROUP701 encodes a H3K4-methytransferase and regulates multiple key processes of rice plant development

(2017) Kunpeng Liu et al.   NEW PHYTOLOGIST

Differential deposition of H2A.Z in combination with histone modifications within related genes in Oryza sativa callus and seedling

(2017) Kang Zhang et al.   PLANT JOURNAL

ATX3 , ATX4 , and ATX5 Encode Putative H3K4 Methyltransferases and Are Critical for Plant Development

(2017) Li-Qun Chen et al.   PLANT PHYSIOLOGY

SDG2-Mediated H3K4me3 Is Crucial for Chromatin Condensation and Mitotic Division during Male Gametogenesis in Arabidopsis

(2017) Violaine Pinon et al.   PLANT PHYSIOLOGY

Temporal dynamics of gene expression and histone marks at the Arabidopsis shoot meristem during flowering

(2017) Yuan You et al.   Nature Communications

Integrated analysis and transcript abundance modelling of H3K4me3 and H3K27me3 in developing secondary xylem

(2017) Steven G. Hussey et al.   Scientific Reports

Is H3K4me3 instructive for transcription activation?

(2016) Françoise S. Howe et al.   BIOESSAYS

H3K4 tri-methylation breadth at transcription start sites impacts the transcriptome of systemic lupus erythematosus

(2016) Zhe Zhang et al.   Clinical Epigenetics

Set1/COMPASS and Mediator are repurposed to promote epigenetic transcriptional memory

(2016) Agustina D'Urso et al.   eLife

JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators

(2015) Yuxuan Hou et al.   BMC PLANT BIOLOGY

A hit-and-run heat shock factor governs sustained histone methylation and transcriptional stress memory

(2015) J. La mke et al.   EMBO JOURNAL

Broad H3K4me3 is associated with increased transcription elongation and enhancer activity at tumor-suppressor genes

(2015) Kaifu Chen et al.   NATURE GENETICS

Two novel NAC transcription factors regulate gene expression and flowering time by associating with the histone demethylase JMJ14

(2015) Yong-Qiang Ning et al.   NUCLEIC ACIDS RESEARCH

Regulation of Histone Methylation and Reprogramming of Gene Expression in the Rice Inflorescence Meristem

(2015) Xiaoyun Liu et al.   PLANT CELL

H2A.Z mediates different aspects of chromatin function and modulates flowering responses in Arabidopsis

(2015) José A. Jarillo et al.   PLANT JOURNAL

A Genome-Wide Chronological Study of Gene Expression and Two Histone Modifications, H3K4me3 and H3K9ac, during Developmental Leaf Senescence

(2015) Judy A. Brusslan et al.   PLANT PHYSIOLOGY

The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants

(2015) Ying Li et al.   GENOME BIOLOGY

Chromatin assembly factor CAF-1 represses priming of plant defence response genes

(2015) Iva Mozgová et al.   Nature Plants

ARABIDOPSIS HOMOLOG of TRITHORAX1 (ATX1) is required for cell production, patterning, and morphogenesis in root development

(2014) Selene Napsucialy-Mendivil et al.   JOURNAL OF EXPERIMENTAL BOTANY

Lysine Acetylation Controls Local Protein Conformation by Influencing Proline Isomerization

(2014) Françoise S. Howe et al.   MOLECULAR CELL

H3K27me3 and H3K4me3 Chromatin Environment at Super-Induced Dehydration Stress Memory Genes of Arabidopsis thaliana

(2014) Ning Liu et al.   Molecular Plant

Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state

(2014) Pedro Crevillén et al.   NATURE

Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors

(2014) A. Stief et al.   PLANT CELL

The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States

(2014) J. Sequeira-Mendes et al.   PLANT CELL

Chromatin-Dependent Repression of the Arabidopsis Floral Integrator Genes Involves Plant Specific PHD-Containing Proteins

(2014) L. Lopez-Gonzalez et al.   PLANT CELL

Trithorax Group Protein Oryza sativa Trithorax1 Controls Flowering Time in Rice via Interaction with Early heading date3

(2014) S. C. Choi et al.   PLANT PHYSIOLOGY

Se14, Encoding a JmjC Domain-Containing Protein, Plays Key Roles in Long-Day Suppression of Rice Flowering through the Demethylation of H3K4me3 of RFT1

(2014) Takayuki Yokoo et al.   PLoS One

Arabidopsis AL PHD-PRC1 Complexes Promote Seed Germination through H3K4me3-to-H3K27me3 Chromatin State Switch in Repression of Seed Developmental Genes

(2014) Anne Marie Molitor et al.   PLoS Genetics

Over-expression of histone H3K4 demethylase gene JMJ15 enhances salt tolerance in Arabidopsis

(2014) Yuan Shen et al.   Frontiers in Plant Science

ALFIN-LIKE 6 is involved in root hair elongation during phosphate deficiency in Arabidopsis

(2013) Nulu Naga Prafulla Chandrika et al.   NEW PHYTOLOGIST

Regulation of Transcription of Nucleotide-Binding Leucine-Rich Repeat-Encoding Genes SNC1 and RPP4 via H3K4 Trimethylation

(2013) S. Xia et al.   PLANT PHYSIOLOGY

SDG2-Mediated H3K4 Methylation Is Required for Proper Arabidopsis Root Growth and Development

(2013) Xiaozhen Yao et al.   PLoS One

Interplay between Active Chromatin Marks and RNA-Directed DNA Methylation in Arabidopsis thaliana

(2013) Maxim V. C. Greenberg et al.   PLoS Genetics

Structural Basis of a Histone H3 Lysine 4 Demethylase Required for Stem Elongation in Rice

(2013) Qingfeng Chen et al.   PLoS Genetics

Sugar is an endogenous cue for juvenile-to-adult phase transition in plants

(2013) Sha Yu et al.   eLife

The COMPASS Family of Histone H3K4 Methylases: Mechanisms of Regulation in Development and Disease Pathogenesis

(2012) Ali Shilatifard   Annual Review of Biochemistry

Bivalent histone modifications in early embryogenesis

(2012) Nadine L Vastenhouw et al.   CURRENT OPINION IN CELL BIOLOGY

Cfp1 integrates both CpG content and gene activity for accurate H3K4me3 deposition in embryonic stem cells

(2012) T. Clouaire et al.   GENES & DEVELOPMENT

Histone methylation: a dynamic mark in health, disease and inheritance

(2012) Eric L. Greer et al.   NATURE REVIEWS GENETICS

ARABIDOPSIS TRITHORAX-RELATED3/SET DOMAIN GROUP2 is Required for the Winter-Annual Habit of Arabidopsis thaliana

(2012) Jae-Young Yun et al.   PLANT AND CELL PHYSIOLOGY

Overexpression of a histone H3K4 demethylase, JMJ15, accelerates flowering time in Arabidopsis

(2012) Hongchun Yang et al.   PLANT CELL REPORTS

Genome-wide profiling of histone H3K4-tri-methylation and gene expression in rice under drought stress

(2012) Wei Zong et al.   PLANT MOLECULAR BIOLOGY

Genome-Wide Evaluation of Histone Methylation Changes Associated with Leaf Senescence in Arabidopsis

(2012) Judy A. Brusslan et al.   PLoS One

The Dynamic Changes of DNA Methylation and Histone Modifications of Salt Responsive Transcription Factor Genes in Soybean

(2012) Yuguang Song et al.   PLoS One

Ordered changes in histone modifications at the core of the Arabidopsis circadian clock

(2012) J. Malapeira et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How do plants feel the heat?

(2012) Ron Mittler et al.   TRENDS IN BIOCHEMICAL SCIENCES

Multiple exposures to drought 'train' transcriptional responses in Arabidopsis

(2012) Yong Ding et al.   Nature Communications

A Companion Cell–Dominant and Developmentally Regulated H3K4 Demethylase Controls Flowering Time in Arabidopsis via the Repression of FLC Expression

(2012) Hongchun Yang et al.   PLoS Genetics

ATX1-Generated H3K4me3 Is Required for Efficient Elongation of Transcription, Not Initiation, at ATX1-Regulated Genes

(2012) Yong Ding et al.   PLoS Genetics

The Association Between H3K4me3 and Antisense Transcription

(2012) Peng Cui et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Combinatorial Patterning of Chromatin Regulators Uncovered by Genome-wide Location Analysis in Human Cells

(2011) Oren Ram et al.   CELL

Recent Transcription-induced Histone H3 Lysine 4 (H3K4) Methylation Inhibits Gene Reactivation

(2011) Bo O. Zhou et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Specificity and Topology of Chromatin Interaction Pathways in Yeast

(2011) Tineke L. Lenstra et al.   MOLECULAR CELL

Arabidopsis REF6 is a histone H3 lysine 27 demethylase

(2011) Falong Lu et al.   NATURE GENETICS

Two Distinct Roles of ARABIDOPSIS HOMOLOG OF TRITHORAX1 (ATX1) at Promoters and within Transcribed Regions of ATX1-Regulated Genes

(2011) Yong Ding et al.   PLANT CELL

The Arabidopsis trithorax-like factor ATX1 functions in dehydration stress responses via ABA-dependent and ABA-independent pathways

(2011) Yong Ding et al.   PLANT JOURNAL

HIGH NITROGEN INSENSITIVE 9 (HNI9)-mediated systemic repression of root NO3−uptake is associated with changes in histone methylation

(2011) Thomas Widiez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Polycomb Repressive Complex 2 Controls the Embryo-to-Seedling Phase Transition

(2011) Daniel Bouyer et al.   PLoS Genetics

Arabidopsis COMPASS-Like Complexes Mediate Histone H3 Lysine-4 Trimethylation to Control Floral Transition and Plant Development

(2011) Danhua Jiang et al.   PLoS Genetics

Histone Methylation in Higher Plants

(2010) Chunyan Liu et al.   Annual Review of Plant Biology

Dynamic Changes in Genome-Wide Histone H3 Lysine 4 Methylation Patterns in Response to Dehydration Stress in Arabidopsis thaliana

(2010) Karin van Dijk et al.   BMC PLANT BIOLOGY

JMJ14 is an H3K4 demethylase regulating flowering time in Arabidopsis

(2010) Falong Lu et al.   CELL RESEARCH

Involvement of a Jumonji-C domain-containing histone demethylase in DRM2-mediated maintenance of DNA methylation

(2010) Angelique Deleris et al.   EMBO REPORTS

Chromatin modification acts as a memory for systemic acquired resistance in the plant stress response

(2010) Michal Jaskiewicz et al.   EMBO REPORTS

JMJ14, a JmjC domain protein, is required for RNA silencing and cell-to-cell movement of an RNA silencing signal in Arabidopsis

(2010) I. R. Searle et al.   GENES & DEVELOPMENT

Involvement of Arabidopsis histone deacetylase HDA6 in ABA and salt stress response

(2010) Li-Ting Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Arabidopsis SET DOMAIN GROUP2Is Required for H3K4 Trimethylation and Is Crucial for Both Sporophyte and Gametophyte Development

(2010) Alexandre Berr et al.   PLANT CELL

A plant-specific histone H3 lysine 4 demethylase represses the floral transition in Arabidopsis

(2010) Wannian Yang et al.   PLANT JOURNAL

The Past, Present, and Future of Vegetative Phase Change

(2010) R. S. Poethig   PLANT PHYSIOLOGY

SET DOMAIN GROUP2 is the major histone H3 lysine 4 trimethyltransferase in Arabidopsis

(2010) L. Guo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution and pleiotropy of TRITHORAX function in Arabidopsis

(2009) Zoya Avramova   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

ARABIDOPSIS TRITHORAX-RELATED7 Is Required for Methylation of Lysine 4 of Histone H3 and for Transcriptional Activation of FLOWERING LOCUS C

(2009) Y. Tamada et al.   PLANT CELL

Arabidopsis ING and Alfin1-like protein families localize to the nucleus and bind to H3K4me3/2 via plant homeodomain fingers

(2009) Woo Yong Lee et al.   PLANT JOURNAL

SET DOMAIN GROUP25 Encodes a Histone Methyltransferase and Is Involved in FLOWERING LOCUS C Activation and Repression of Flowering

(2009) A. Berr et al.   PLANT PHYSIOLOGY

Repression of FLOWERING LOCUS T Chromatin by Functionally Redundant Histone H3 Lysine 4 Demethylases in Arabidopsis

(2009) Ju-Hee Jeong et al.   PLoS One

Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana

(2009) Xiaoyu Zhang et al.   GENOME BIOLOGY

Alterations of Lysine Modifications on the Histone H3 N-Tail under Drought Stress Conditions in Arabidopsis thaliana

(2008) Jong-Myong Kim et al.   PLANT AND CELL PHYSIOLOGY

The Highly Similar Arabidopsis Homologs of Trithorax ATX1 and ATX2 Encode Proteins with Divergent Biochemical Functions

(2008) A. Saleh et al.   PLANT CELL

ARABIDOPSIS TRITHORAX1 Dynamically Regulates FLOWERING LOCUS C Activation via Histone 3 Lysine 4 Trimethylation

(2008) S. Pien et al.   PLANT CELL

High-Resolution Mapping of Epigenetic Modifications of the Rice Genome Uncovers Interplay between DNA Methylation, Histone Methylation, and Gene Expression

(2008) X. Li et al.   PLANT CELL