Comprehensive analysis of microRNA-Seq and target mRNAs of rice sheath blight pathogen provides new insights into pathogenic regulatory mechanisms

RSIADB, a collective resource for genome and transcriptome analyses inRhizoctonia solaniAG1 IA

(2016) Lei Chen et al.   Database-The Journal of Biological Databases and Curation

Small RNAs from the wheat stripe rust fungus (Puccinia striiformis f.sp. tritici)

(2015) Nicholas A. Mueth et al.   BMC GENOMICS

Genome-wide analysis of small RNAs in the wheat pathogenic fungus Zymoseptoria tritici

(2015) Fen Yang   Fungal Biology

sRNA profiling in Aspergillus flavus reveals differentially expressed miRNA-like RNAs response to water activity and temperature

(2015) Youhuang Bai et al.   FUNGAL GENETICS AND BIOLOGY

MicroRNAs in lupus

(2014) Hong Zan et al.   AUTOIMMUNITY

Global Protein–Protein Interaction Network of Rice Sheath Blight Pathogen

(2014) Ding Lei et al.   JOURNAL OF PROTEOME RESEARCH

Identification and consequences of miRNA–target interactions — beyond repression of gene expression

(2014) Jean Hausser et al.   NATURE REVIEWS GENETICS

The Pathogen-Host Interactions database (PHI-base): additions and future developments

(2014) Martin Urban et al.   NUCLEIC ACIDS RESEARCH

Plant Surface Cues Prime Ustilago maydis for Biotrophic Development

(2014) Daniel Lanver et al.   PLoS Pathogens

Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi

(2013) Zhongtao Zhao et al.   BMC GENOMICS

Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding

(2013) Aleksandra Helwak et al.   CELL

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Multiple Rice MicroRNAs Are Involved in Immunity against the Blast Fungus Magnaporthe oryzae

(2013) Y. Li et al.   PLANT PHYSIOLOGY

Identification of microRNA-Like RNAs in the Filamentous Fungus Trichoderma reesei by Solexa Sequencing

(2013) Kang Kang et al.   PLoS One

The evolution and pathogenic mechanisms of the rice sheath blight pathogen

(2013) Aiping Zheng et al.   Nature Communications

Identification of MicroRNA-Like RNAs in Mycelial and Yeast Phases of the Thermal Dimorphic Fungus Penicillium marneffei

(2013) Susanna K. P. Lau et al.   PLoS Neglected Tropical Diseases

Plant Immunity to Necrotrophs

(2012) Tesfaye Mengiste   Annual Review of Phytopathology

Genome-wide identification and profiling of microRNA-like RNAs from Metarhizium anisopliae during development

(2012) Quan Zhou et al.   Fungal Biology

Identification of microRNA-like RNAs in a plant pathogenic fungus Sclerotinia sclerotiorum by high-throughput sequencing

(2012) Jiahong Zhou et al.   MOLECULAR GENETICS AND GENOMICS

Cellulases Belonging to Glycoside Hydrolase Families 6 and 7 Contribute to the Virulence ofMagnaporthe oryzae

(2012) Ba Van Vu et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Performance comparison and evaluation of software tools for microRNA deep-sequencing data analysis

(2012) Yue Li et al.   NUCLEIC ACIDS RESEARCH

Identification and Functional Demonstration of miRNAs in the Fungus Cryptococcus neoformans

(2012) Nan Jiang et al.   PLoS One

Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae

(2011) Cristiano C Nunes et al.   BMC GENOMICS

The exocyst complex in exocytosis and cell migration

(2011) Jianglan Liu et al.   PROTOPLASMA

Phylogenetic analysis of fungal ABC transporters

(2010) Andriy Kovalchuk et al.   BMC GENOMICS

Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides

(2010) Francisco Esteban Nicolas et al.   NUCLEIC ACIDS RESEARCH

A rice fungal MAMP-responsive MAPK cascade regulates metabolic flow to antimicrobial metabolite synthesis

(2010) Mitsuko Kishi-Kaboshi et al.   PLANT JOURNAL

Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

(2010) P. D. Spanu et al.   SCIENCE

Origins and Mechanisms of miRNAs and siRNAs

(2009) Richard W. Carthew et al.   CELL

Identification of Novel Epstein-Barr Virus MicroRNA Genes from Nasopharyngeal Carcinomas

(2009) J. Y. Zhu et al.   JOURNAL OF VIROLOGY

qiRNA is a new type of small interfering RNA induced by DNA damage

(2009) Heng-Chi Lee et al.   NATURE

Small silencing RNAs: an expanding universe

(2009) Megha Ghildiyal et al.   NATURE REVIEWS GENETICS

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(2009) V. Narry Kim et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Efflux in Fungi: La Pièce de Résistance

(2009) Jeffrey J. Coleman et al.   PLoS Pathogens

A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains

(2008) Q.-H. Zhu et al.   GENOME RESEARCH

Development of a Dual-Luciferase Reporter System for In Vivo Visualization of MicroRNA Biogenesis and Posttranscriptional Regulation

(2008) J. Y. Lee et al.   JOURNAL OF NUCLEAR MEDICINE

Discovering microRNAs from deep sequencing data using miRDeep

(2008) Marc R Friedländer et al.   NATURE BIOTECHNOLOGY

Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)

(2008) C. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional analysis of a novel ABC transporter ABC4 fromMagnaporthe grisea

(2007) Archna Gupta et al.   FEMS MICROBIOLOGY LETTERS