Nuclear eDNA estimates population allele frequencies and abundance in experimental mesocosms and field samples

Seasonal habitat use indicates that depth may mediate the potential for invasive round goby impacts in inland lakes

(2020) Kara J. Andres et al.   FRESHWATER BIOLOGY

Beyond Biodiversity: Can Environmental DNA (eDNA) Cut It as a Population Genetics Tool?

(2019) Clare I.M. Adams et al.   Genes

Improving eDNA yield and inhibitor reduction through increased water volumes and multi-filter isolation techniques

(2019) Margaret E. Hunter et al.   Scientific Reports

Population‐level inferences from environmental DNA—Current status and future perspectives

(2019) Eva Egelyng Sigsgaard et al.   Evolutionary Applications

Understanding PCR Processes to Draw Meaningful Conclusions from Environmental DNA Studies

(2019) Ryan P. Kelly et al.   Scientific Reports

From metabarcoding to metaphylogeography: separating the wheat from the chaff

(2019) Xavier Turon et al.   ECOLOGICAL APPLICATIONS

Mitochondrial DNA is unsuitable to test for isolation by distance

(2018) Peter R. Teske et al.   Scientific Reports

Estimating intraspecific genetic diversity from community DNA metabarcoding data

(2018) Vasco Elbrecht et al.   PeerJ

Measuring Genetic Differentiation from Pool-seq Data

(2018) Valentin Hivert et al.   GENETICS

Estimating the number of contributors to DNA mixtures provides a novel tool for ecology

(2018) Suresh A. Sethi et al.   Methods in Ecology and Evolution

Water, water everywhere: environmental DNA can unlock population structure in elusive marine species

(2018) Kim M. Parsons et al.   Royal Society Open Science

Environmental DNA metabarcoding: Transforming how we survey animal and plant communities

(2017) Kristy Deiner et al.   MOLECULAR ECOLOGY

Risk Analysis and Bioeconomics of Invasive Species to Inform Policy and Management

(2016) David M. Lodge et al.   Annual Review of Environment and Resources

Cryptic genetic diversity and spatial patterns of admixture within Belizean marine reserves

(2016) C. C. D’Aloia et al.   CONSERVATION GENETICS

Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods

(2016) Bernd Hänfling et al.   MOLECULAR ECOLOGY

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

(2016) Alice Valentini et al.   MOLECULAR ECOLOGY

Nuclear internal transcribed spacer-1 as a sensitive genetic marker for environmental DNA studies in common carpCyprinus carpio

(2016) Toshifumi Minamoto et al.   Molecular Ecology Resources

Estimating fish abundance and biomass from eDNA concentrations: variability among capture methods and environmental conditions

(2016) Anaïs Lacoursière-Roussel et al.   Molecular Ecology Resources

Comparison of capture and storage methods for aqueous macrobial eDNA using an optimized extraction protocol: advantage of enclosed filter

(2016) Johan Spens et al.   Methods in Ecology and Evolution

Critical considerations for the application of environmental DNA methods to detect aquatic species

(2016) Caren S. Goldberg et al.   Methods in Ecology and Evolution

Evaluating the effects of laboratory protocols on eDNA detection probability for an endangered freshwater fish

(2016) Maxine P. Piggott   Ecology and Evolution

Population characteristics of a large whale shark aggregation inferred from seawater environmental DNA

(2016) Eva Egelyng Sigsgaard et al.   Nature Ecology & Evolution

Quantification of eDNA shedding rates from invasive bighead carp Hypophthalmichthys nobilis and silver carp Hypophthalmichthys molitrix

(2015) Katy E. Klymus et al.   BIOLOGICAL CONSERVATION

Monitoring of animal abundance by environmental DNA — An increasingly obscure perspective: A reply to Klymus et al., 2015

(2015) Lars L. Iversen et al.   BIOLOGICAL CONSERVATION

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

The ecology of environmental DNA and implications for conservation genetics

(2015) Matthew A. Barnes et al.   CONSERVATION GENETICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Using Environmental DNA to Census Marine Fishes in a Large Mesocosm

(2014) Ryan P. Kelly et al.   PLoS One

The Release Rate of Environmental DNA from Juvenile and Adult Fish

(2014) Atsushi Maruyama et al.   PLoS One

Environmental DNA for wildlife biology and biodiversity monitoring

(2014) Kristine Bohmann et al.   TRENDS IN ECOLOGY & EVOLUTION

Estimating occupancy and abundance of stream amphibians using environmental DNA from filtered water samples

(2013) David S. Pilliod et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Estimation of population allele frequencies from next-generation sequencing data: pool-versus individual-based genotyping

(2013) Mathieu Gautier et al.   MOLECULAR ECOLOGY

Pool-hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples

(2013) Simon Boitard et al.   Molecular Ecology Resources

Improved detection of an alien invasive species through environmental DNA barcoding: the example of the American bullfrogLithobates catesbeianus

(2012) Tony Dejean et al.   JOURNAL OF APPLIED ECOLOGY

Twenty years of invasion: a review of round goby Neogobius melanostomus biology, spread and ecological implications

(2012) M. S. Kornis et al.   JOURNAL OF FISH BIOLOGY

The future of environmental DNA in ecology

(2012) NIGEL G. YOCCOZ   MOLECULAR ECOLOGY

Conservation in a cup of water: estimating biodiversity and population abundance from environmental DNA

(2012) DAVID M. LODGE et al.   MOLECULAR ECOLOGY

Environmental DNA

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Estimation of Fish Biomass Using Environmental DNA

(2012) Teruhiko Takahara et al.   PLoS One

Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples

(2012) Philip Francis Thomsen et al.   PLoS One

“Sight-unseen” detection of rare aquatic species using environmental DNA

(2011) Christopher L. Jerde et al.   Conservation Letters

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

Invasion dynamics of round goby (Neogobius melanostomus) in Hamilton Harbour, Lake Ontario

(2010) Luis A. Vélez-Espino et al.   BIOLOGICAL INVASIONS

Fish and Macroinvertebrate Communities in Tributary Streams of Eastern Lake Erie with and without Round Gobies (Neogobius melanostomus, Pallas 1814)

(2010) Peter J. Krakowiak et al.   JOURNAL OF GREAT LAKES RESEARCH

A pound of prevention, plus a pound of cure: Early detection and eradication of invasive species in the Laurentian Great Lakes

(2010) M. Jake Vander Zanden et al.   JOURNAL OF GREAT LAKES RESEARCH

Molecular systematics and population genetics of biological invasions: towards a better understanding of invasive species management

(2008) J. Le Roux et al.   ANNALS OF APPLIED BIOLOGY

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Species detection using environmental DNA from water samples

(2008) G. F. Ficetola et al.   Biology Letters

msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design

(2007) BRANT C. FAIRCLOTH   Molecular Ecology Resources