Antigenic variation of SARS‐CoV‐2 in response to immune pressure

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A pneumonia outbreak associated with a new coronavirus of probable bat origin

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We shouldn’t worry when a virus mutates during disease outbreaks

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The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2

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Targets of T Cell Responses to SARS-CoV-2 Coronavirus in Humans with COVID-19 Disease and Unexposed Individuals

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A Sequence Homology and Bioinformatic Approach Can Predict Candidate Targets for Immune Responses to SARS-CoV-2

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Immunology of COVID-19: current state of the science

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Computational Inference of Selection Underlying the Evolution of the Novel Coronavirus, Severe Acute Respiratory Syndrome Coronavirus 2

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Isolation of SARS-CoV-2-related coronavirus from Malayan pangolins

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Identifying SARS-CoV-2 related coronaviruses in Malayan pangolins

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The proximal origin of SARS-CoV-2

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Two linear epitopes on the SARS-CoV-2 spike protein that elicit neutralising antibodies in COVID-19 patients

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Are pangolins the intermediate host of the 2019 novel coronavirus (SARS-CoV-2)?

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Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus

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COVID-19, SARS and MERS: are they closely related?

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Early Insights into Immune Responses during COVID-19

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Clinical and immunological assessment of asymptomatic SARS-CoV-2 infections

(2020) Quan-Xin Long et al.   NATURE MEDICINE

Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic

(2020) Maciej F. Boni et al.   Nature Microbiology

Immune Phenotyping Based on the Neutrophil-to-Lymphocyte Ratio and IgG Level Predicts Disease Severity and Outcome for Patients With COVID-19

(2020) Bicheng Zhang et al.   Frontiers in Molecular Biosciences

A Single-Dose Intranasal ChAd Vaccine Protects Upper and Lower Respiratory Tracts against SARS-CoV-2

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Intermittent fasting, a possible priming tool for host defense against SARS-CoV-2 infection: Crosstalk among calorie restriction, autophagy and immune response

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Emergence of genomic diversity and recurrent mutations in SARS-CoV-2

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Spike mutation D614G alters SARS-CoV-2 fitness

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Broad and strong memory CD4+ and CD8+ T cells induced by SARS-CoV-2 in UK convalescent individuals following COVID-19

(2020) Yanchun Peng et al.   NATURE IMMUNOLOGY

Identification of immunodominant linear epitopes from SARS-CoV-2 patient plasma

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Decline of Humoral Responses against SARS-CoV-2 Spike in Convalescent Individuals

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Origin and evolution of the major histocompatibility complex class I region in eutherian mammals

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Origin and evolution of pathogenic coronaviruses

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NetMHCpan-4.0: Improved Peptide–MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data

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BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes

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Structure-guided evolution of antigenically distinct adeno-associated virus variants for immune evasion

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Molecular Evolution of Human Coronavirus Genomes

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Characterization of the Antigen Processing Machinery and Endogenous Peptide Presentation of a Bat MHC Class I Molecule

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Evolution and comparative analysis of the bat MHC-I region

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Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus

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M. tuberculosis T Cell Epitope Analysis Reveals Paucity of Antigenic Variation and Identifies Rare Variable TB Antigens

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Phylodynamics of H1N1/2009 influenza reveals the transition from host adaptation to immune-driven selection

(2015) Yvonne C. F. Su et al.   Nature Communications

Antibody Light-Chain-Restricted Recognition of the Site of Immune Pressure in the RV144 HIV-1 Vaccine Trial Is Phylogenetically Conserved

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T cell-mediated immune response to respiratory coronaviruses

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Immunological consequences of intragenus conservation ofMycobacterium tuberculosisT-cell epitopes

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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

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Immune Activation Promotes Evolutionary Conservation of T-Cell Epitopes in HIV-1

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The immune gene repertoire of an important viral reservoir, the Australian black flying fox

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Reliable B Cell Epitope Predictions: Impacts of Method Development and Improved Benchmarking

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Coronaviruses

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When t-tests or Wilcoxon-Mann-Whitney tests won't do

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Escape from Human Monoclonal Antibody Neutralization Affects In Vitro and In Vivo Fitness of Severe Acute Respiratory Syndrome Coronavirus

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Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved

(2010) Iñaki Comas et al.   NATURE GENETICS

Structural and Functional Constraints Limit Options for Cytotoxic T-Lymphocyte Escape in the Immunodominant HLA-B27-Restricted Epitope in Human Immunodeficiency Virus Type 1 Capsid

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A Detailed Analysis of the Murine TAP Transporter Substrate Specificity

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The Population Genetics of dN/dS

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