Activation of a T-box-Otx2-Gsc gene network independent of TBP and TBP-related factors

Xenbase: Core features, data acquisition, and data processing

(2015) Christina James-Zorn et al.   GENESIS

Architecture of the Saccharomyces cerevisiae SAGA transcription coactivator complex

(2014) Y. Han et al.   EMBO JOURNAL

DrosophilaTRF2 is a preferential core promoter regulator

(2014) Adi Kedmi et al.   GENES & DEVELOPMENT

TRF2 and the evolution of the bilateria

(2014) Sascha H.C. Duttke et al.   GENES & DEVELOPMENT

The SAGA coactivator complex acts on the whole transcribed genome and is required for RNA polymerase II transcription

(2014) Jacques Bonnet et al.   GENES & DEVELOPMENT

TRF2, but not TBP, mediates the transcription of ribosomal protein genes

(2014) Y.-L. Wang et al.   GENES & DEVELOPMENT

Functions of SAGA in development and disease

(2014) Li Wang et al.   Epigenomics

Occupancy of tissue-specific cis-regulatory modules by Otx2 and TLE/Groucho for embryonic head specification

(2014) Yuuri Yasuoka et al.   Nature Communications

Chromatin and DNA sequences in defining promoters for transcription initiation

(2013) Ferenc Müller et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

A genome-wide survey of maternal and embryonic transcripts during Xenopus tropicalis development

(2013) Sarita S Paranjpe et al.   BMC GENOMICS

Principles of nucleation of H3K27 methylation during embryonic development

(2013) S. J. van Heeringen et al.   GENOME RESEARCH

In Vivo T-Box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuromesodermal Bipotency

(2013) George E. Gentsch et al.   Cell Reports

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

ATAC-king the complexity of SAGA during evolution

(2012) G. Spedale et al.   GENES & DEVELOPMENT

Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans

(2012) Karen Adelman et al.   NATURE REVIEWS GENETICS

TBP-related factors: a paradigm of diversity in transcription initiation

(2011) Waseem Akhtar et al.   Cell and Bioscience

Quantitative Interaction Proteomics and Genome-wide Profiling of Epigenetic Histone Marks and Their Readers

(2010) Michiel Vermeulen et al.   CELL

SnapShot: Network Motifs

(2010) Oren Shoval et al.   CELL

Developmental regulation of transcription initiation: more than just changing the actors

(2010) Ferenc Müller et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

The ATAC acetyl transferase complex controls mitotic progression by targeting non-histone substrates

(2010) Meritxell Orpinell et al.   EMBO JOURNAL

Emerging properties of animal gene regulatory networks

(2010) Eric H. Davidson   NATURE

GREAT improves functional interpretation of cis-regulatory regions

(2010) Cory Y McLean et al.   NATURE BIOTECHNOLOGY

Tomio Tada 1934–2010

(2010) Masaru Taniguchi   NATURE IMMUNOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

TBP2 is a substitute for TBP in Xenopus oocyte transcription

(2009) Waseem Akhtar et al.   BMC BIOLOGY

The metazoan ATAC and SAGA coactivator HAT complexes regulate different sets of inducible target genes

(2009) Zita Nagy et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Coordinated activation of the secretory pathway during notochord formation in the Xenopus embryo

(2009) K. Tanegashima et al.   DEVELOPMENT

Regulation of gene expression via the core promoter and the basal transcriptional machinery

(2009) Tamar Juven-Gershon et al.   DEVELOPMENTAL BIOLOGY

TBP2 is essential for germ cell development by regulating transcription and chromatin condensation in the oocyte

(2009) E. Gazdag et al.   GENES & DEVELOPMENT

Zygotic VegT is required for Xenopus paraxial mesoderm formation and is regulated by Nodal signaling and Eomesodermin

(2009) Masakazu Fukuda et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Lrig3 regulates neural crest formation in Xenopus by modulating Fgf and Wnt signaling pathways

(2008) H. Zhao et al.   DEVELOPMENT

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY