标题
A comprehensive evaluation of long read error correction methods
作者
关键词
-
出版物
BMC GENOMICS
Volume 21, Issue S6, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-12-21
DOI
10.1186/s12864-020-07227-0
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- FLAS: fast and high throughput algorithm for PacBio long read self-correction
- (2019) Ergude Bao et al. BIOINFORMATICS
- Hybrid correction of highly noisy long reads using a variable-order de Bruijn graph
- (2018) Pierre Morisse et al. BIOINFORMATICS
- FMLRC: Hybrid long read error correction using an FM-index
- (2018) Jeremy R. Wang et al. BMC BIOINFORMATICS
- Nanopore sequencing and assembly of a human genome with ultra-long reads
- (2018) Miten Jain et al. NATURE BIOTECHNOLOGY
- Accurate detection of complex structural variations using single-molecule sequencing
- (2018) Fritz J. Sedlazeck et al. NATURE METHODS
- Piercing the dark matter: bioinformatics of long-range sequencing and mapping
- (2018) Fritz J. Sedlazeck et al. NATURE REVIEWS GENETICS
- Hercules: a profile HMM-based hybrid error correction algorithm for long reads
- (2018) Can Firtina et al. NUCLEIC ACIDS RESEARCH
- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
- Efficiency of PacBio long read correction by 2nd generation Illumina sequencing
- (2017) Medhat Mahmoud et al. GENOMICS
- Detecting DNA cytosine methylation using nanopore sequencing
- (2017) Jared T Simpson et al. NATURE METHODS
- Mapping DNA methylation with high-throughput nanopore sequencing
- (2017) Arthur C Rand et al. NATURE METHODS
- Jabba: hybrid error correction for long sequencing reads
- (2016) Giles Miclotte et al. Algorithms for Molecular Biology
- CoLoRMap: Correcting Long Reads by Mapping short reads
- (2016) Ehsan Haghshenas et al. BIOINFORMATICS
- SimLoRD: Simulation of Long Read Data
- (2016) Bianca K. Stöcker et al. BIOINFORMATICS
- Phased diploid genome assembly with single-molecule real-time sequencing
- (2016) Chen-Shan Chin et al. NATURE METHODS
- Objective review of de novo stand-alone error correction methods for NGS data
- (2016) Andy S. Alic et al. Wiley Interdisciplinary Reviews-Computational Molecular Science
- Genome assembly using Nanopore-guided long and error-free DNA reads
- (2015) Mohammed-Amin Madoui et al. BMC GENOMICS
- Denoising DNA deep sequencing data—high-throughput sequencing errors and their correction
- (2015) David Laehnemann et al. BRIEFINGS IN BIOINFORMATICS
- Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome
- (2015) Sara Goodwin et al. GENOME RESEARCH
- Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
- (2015) Konstantin Berlin et al. NATURE BIOTECHNOLOGY
- A complete bacterial genome assembled de novo using only nanopore sequencing data
- (2015) Nicholas J Loman et al. NATURE METHODS
- Improved data analysis for the MinION nanopore sequencer
- (2015) Miten Jain et al. NATURE METHODS
- Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing
- (2015) Sean P. Gordon et al. PLoS One
- Indexing Arbitrary-Length k-Mers in Sequencing Reads
- (2015) Tomasz Kowalski et al. PLoS One
- LoRDEC: accurate and efficient long read error correction
- (2014) Leena Salmela et al. BIOINFORMATICS
- proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
- (2014) Thomas Hackl et al. BIOINFORMATICS
- Resolving the complexity of the human genome using single-molecule sequencing
- (2014) Mark J. P. Chaisson et al. NATURE
- MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island
- (2014) Philip M Ashton et al. NATURE BIOTECHNOLOGY
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
- (2013) Chen-Shan Chin et al. NATURE METHODS
- Microbial phylogenetic profiling with the Pacific Biosciences sequencing platform
- (2013) Erin B Fichot et al. Microbiome
- Pacific biosciences sequencing technology for genotyping and variation discovery in human data
- (2012) Mauricio O Carneiro et al. BMC GENOMICS
- A survey of error-correction methods for next-generation sequencing
- (2012) X. Yang et al. BRIEFINGS IN BIOINFORMATICS
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Hybrid error correction and de novo assembly of single-molecule sequencing reads
- (2012) Sergey Koren et al. NATURE BIOTECHNOLOGY
- Improving PacBio Long Read Accuracy by Short Read Alignment
- (2012) Kin Fai Au et al. PLoS One
- Reptile: representative tiling for short read error correction
- (2010) X. Yang et al. BIOINFORMATICS
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now