Calibrating Environmental DNA Metabarcoding to Conventional Surveys for Measuring Fish Species Richness
出版年份 2020 全文链接
标题
Calibrating Environmental DNA Metabarcoding to Conventional Surveys for Measuring Fish Species Richness
作者
关键词
-
出版物
Frontiers in Ecology and Evolution
Volume 8, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2020-08-28
DOI
10.3389/fevo.2020.00276
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Reference databases, primer choice, and assay sensitivity for environmental metabarcoding: Lessons learnt from a re‐evaluation of an eDNA fish assessment in the Volga headwaters
- (2020) Tamara Schenekar et al. RIVER RESEARCH AND APPLICATIONS
- At Palmyra Atoll, the fish‐community environmental DNA signal changes across habitats but not with tides
- (2020) Kevin D. Lafferty et al. JOURNAL OF FISH BIOLOGY
- The projected timing of abrupt ecological disruption from climate change
- (2020) Christopher H. Trisos et al. NATURE
- Are Environmental DNA Methods Ready for Aquatic Invasive Species Management?
- (2020) Adam J. Sepulveda et al. TRENDS IN ECOLOGY & EVOLUTION
- Standards for Methods Utilizing Environmental DNA for Detection of Fish Species
- (2020) Lu Shu et al. Genes
- Improved Environmental DNA Reference Library Detects Overlooked Marine Fishes in New Jersey, United States
- (2020) Mark Y. Stoeckle et al. Frontiers in Marine Science
- Assessing eukaryotic biodiversity in the Florida Keys National Marine Sanctuary through environmental DNA metabarcoding
- (2019) Natalie A. Sawaya et al. Ecology and Evolution
- Optimizing environmental DNA sampling effort for fish inventories in tropical streams and rivers
- (2019) Isabel Cantera et al. Scientific Reports
- Environmental DNA metabarcoding for fish community analysis in backwater lakes: A comparison of capture methods
- (2019) Kazuya Fujii et al. PLoS One
- Measuring global fish species richness with eDNA metabarcoding
- (2019) Christopher L. Jerde et al. Molecular Ecology Resources
- Ground-truthing of a fish-based environmental DNA metabarcoding method for assessing the quality of lakes
- (2019) Jianlong Li et al. JOURNAL OF APPLIED ECOLOGY
- Environmental DNA metabarcoding as an effective and rapid tool for fish monitoring in canals
- (2019) Allan D. McDevitt et al. JOURNAL OF FISH BIOLOGY
- Using eDNA to biomonitor the fish community in a tropical oligotrophic lake
- (2019) Martha Valdez-Moreno et al. PLoS One
- Environmental DNA Collected from Snow Tracks is Useful for Identification of Mammalian Species
- (2019) Gohta Kinoshita et al. ZOOLOGICAL SCIENCE
- Comprehensive biodiversity analysis via ultra-deep patterned flow cell technology: a case study of eDNA metabarcoding seawater
- (2019) G. A. C. Singer et al. Scientific Reports
- Fish diversity assessment in the headwaters of the Volga River using environmental DNA metabarcoding
- (2019) Laurène A. Lecaudey et al. AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS
- COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems
- (2019) Mehrdad Hajibabaei et al. PLoS One
- Non‐specific amplification compromises environmental DNA metabarcoding with COI
- (2019) Rupert A. Collins et al. Methods in Ecology and Evolution
- Gaps in DNA-Based Biomonitoring Across the Globe
- (2019) Katie M. McGee et al. Frontiers in Ecology and Evolution
- Environmental DNA is not the tool by itself
- (2019) Anaïs Lacoursière‐Roussel et al. JOURNAL OF FISH BIOLOGY
- The geography of biodiversity change in marine and terrestrial assemblages
- (2019) Shane A. Blowes et al. SCIENCE
- Understanding PCR Processes to Draw Meaningful Conclusions from Environmental DNA Studies
- (2019) Ryan P. Kelly et al. Scientific Reports
- Recent pace of change in human impact on the world’s ocean
- (2019) Benjamin S. Halpern et al. Scientific Reports
- Can we manage fisheries with the inherent uncertainty from eDNA?
- (2019) Christopher L. Jerde JOURNAL OF FISH BIOLOGY
- eDNA metabarcoding as a promising conservation tool for monitoring fish diversity in a coastal wetland of the Pearl River Estuary compared to bottom trawling
- (2019) Keshu Zou et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Combined use of eDNA metabarcoding and video surveillance for the assessment of fish biodiversity
- (2018) Michal Stat et al. CONSERVATION BIOLOGY
- Comparing local- and regional-scale estimations of the diversity of stream fish using eDNA metabarcoding and conventional observation methods
- (2018) Hikaru Nakagawa et al. FRESHWATER BIOLOGY
- Unlocking biodiversity and conservation studies in high-diversity environments using environmental DNA (eDNA): A test with Guianese freshwater fishes
- (2018) Kévin Cilleros et al. Molecular Ecology Resources
- Towards robust and repeatable sampling methods in eDNA-based studies
- (2018) Ian A. Dickie et al. Molecular Ecology Resources
- Effects of sampling effort on biodiversity patterns estimated from environmental DNA metabarcoding surveys
- (2018) Erin K. Grey et al. Scientific Reports
- eDNA metabarcoding as a new surveillance approach for coastal Arctic biodiversity
- (2018) Anaïs Lacoursière-Roussel et al. Ecology and Evolution
- Environmental DNA illuminates the dark diversity of sharks
- (2018) Germain Boussarie et al. Science Advances
- Metabarcoding using multiplexed markers increases species detection in complex zooplankton communities
- (2018) Guang K. Zhang et al. Evolutionary Applications
- Accuracy, limitations and cost efficiency of eDNA-based community survey in tropical frogs
- (2018) Miklós Bálint et al. Molecular Ecology Resources
- Environmental DNA reveals quantitative patterns of fish biodiversity in large rivers despite its downstream transportation
- (2018) Didier Pont et al. Scientific Reports
- Emerging threats and persistent conservation challenges for freshwater biodiversity
- (2018) Andrea J. Reid et al. BIOLOGICAL REVIEWS
- Direct fishing and eDNA metabarcoding for biomonitoring during a 3-year survey significantly improves number of fish detected around a South East Asian reservoir
- (2018) Benjamin Gillet et al. PLoS One
- Comparative Cost and Effort of Fish Distribution Detection via Environmental DNA Analysis and Electrofishing
- (2017) Nathan T. Evans et al. FISHERIES
- Seawater environmental DNA reflects seasonality of a coastal fish community
- (2017) Eva Egelyng Sigsgaard et al. MARINE BIOLOGY
- Environmental DNA detection of rare and invasive fish species in two Great Lakes tributaries
- (2017) Katherine D. Balasingham et al. MOLECULAR ECOLOGY
- Environmental DNA metabarcoding: Transforming how we survey animal and plant communities
- (2017) Kristy Deiner et al. MOLECULAR ECOLOGY
- eDNA metabarcoding: a promising method for anuran surveys in highly diverse tropical forests
- (2017) Carla M. Lopes et al. Molecular Ecology Resources
- Environmental DNA enables detection of terrestrial mammals from forest pond water
- (2017) Masayuki Ushio et al. Molecular Ecology Resources
- Future threats to biodiversity and pathways to their prevention
- (2017) David Tilman et al. NATURE
- Biodiversity redistribution under climate change: Impacts on ecosystems and human well-being
- (2017) Gretta T. Pecl et al. SCIENCE
- Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment
- (2017) Michael Stat et al. Scientific Reports
- Aquatic environmental DNA detects seasonal fish abundance and habitat preference in an urban estuary
- (2017) Mark Y. Stoeckle et al. PLoS One
- Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea
- (2017) Satoshi Yamamoto et al. Scientific Reports
- Controls on eDNA movement in streams: Transport, Retention, and Resuspension
- (2017) Arial J. Shogren et al. Scientific Reports
- Environmental DNA reveals tropical shark diversity in contrasting levels of anthropogenic impact
- (2017) Judith Bakker et al. Scientific Reports
- Detection of rare and invasive freshwater fish species using eDNA pyrosequencing: Lake Iznik ichthyofauna revised
- (2016) Emre Keskin et al. BIOCHEMICAL SYSTEMATICS AND ECOLOGY
- Comparison of environmental DNA metabarcoding and conventional fish survey methods in a river system
- (2016) Jennifer L.A. Shaw et al. BIOLOGICAL CONSERVATION
- Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods
- (2016) Bernd Hänfling et al. MOLECULAR ECOLOGY
- Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding
- (2016) Alice Valentini et al. MOLECULAR ECOLOGY
- Critical considerations for the application of environmental DNA methods to detect aquatic species
- (2016) Caren S. Goldberg et al. Methods in Ecology and Evolution
- Estimating species richness using environmental DNA
- (2016) Brett P. Olds et al. Ecology and Evolution
- Next-generation freshwater bioassessment: eDNA metabarcoding with a conserved metazoan primer reveals species-rich and reservoir-specific communities
- (2016) Nicholas K. M. Lim et al. Royal Society Open Science
- Spatial Representativeness of Environmental DNA Metabarcoding Signal for Fish Biodiversity Assessment in a Natural Freshwater System
- (2016) Raphaël Civade et al. PLoS One
- Environmental DNA from Seawater Samples Correlate with Trawl Catches of Subarctic, Deepwater Fishes
- (2016) Philip Francis Thomsen et al. PLoS One
- A comparison of the wet and dry season DNA-based soil invertebrate community characteristics in large patches of the bromeliad Bromelia pinguin in a primary forest in Costa Rica
- (2015) Katie M. McGee et al. APPLIED SOIL ECOLOGY
- The effect of dilution and the use of a post-extraction nucleic acid purification column on the accuracy, precision, and inhibition of environmental DNA samples
- (2015) Anna M. McKee et al. BIOLOGICAL CONSERVATION
- Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity
- (2015) Philip Francis Thomsen et al. BIOLOGICAL CONSERVATION
- The ecology of environmental DNA and implications for conservation genetics
- (2015) Matthew A. Barnes et al. CONSERVATION GENETICS
- Deep-Sea, Deep-Sequencing: Metabarcoding Extracellular DNA from Sediments of Marine Canyons
- (2015) Magdalena Guardiola et al. PLoS One
- Efficient and sensitive identification and quantification of airborne pollen using next-generation DNA sequencing
- (2014) Ken Kraaijeveld et al. Molecular Ecology Resources
- Harnessing DNA to improve environmental management
- (2014) R. P. Kelly et al. SCIENCE
- DNA from soil mirrors plant taxonomic and growth form diversity
- (2012) N. G. YOCCOZ et al. MOLECULAR ECOLOGY
- New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems
- (2012) LAURA S. EPP et al. MOLECULAR ECOLOGY
- Investigating the Potential Use of Environmental DNA (eDNA) for Genetic Monitoring of Marine Mammals
- (2012) Andrew D. Foote et al. PLoS One
- Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples
- (2012) Philip Francis Thomsen et al. PLoS One
- “Sight-unseen” detection of rare aquatic species using environmental DNA
- (2011) Christopher L. Jerde et al. Conservation Letters
- Using SiZer to detect thresholds in ecological data
- (2008) Derek L Sonderegger et al. FRONTIERS IN ECOLOGY AND THE ENVIRONMENT
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started