Enterotypes of the Gut Microbial Community and Their Response to Plant Secondary Compounds in Plateau Pikas

Effects of the captive and wild environment on diversity of the gut microbiome of deer mice (Peromyscus maniculatus)

(2019) Elliott Schmidt et al.   ISME Journal

Impact of early events and lifestyle on the gut microbiota and metabolic phenotypes in young school-age children

(2019) Huanzi Zhong et al.   Microbiome

Metagenomic dissection of the canine gut microbiota: insights into taxonomic, metabolic and nutritional features

(2019) Giulia Alessandri et al.   ENVIRONMENTAL MICROBIOLOGY

Stereotypes About Enterotype: the Old and New Ideas

(2019) Mingyue Cheng et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Microbiome Signatures Associated with Steatohepatitis and Moderate to Severe Fibrosis in Children With Nonalcoholic Fatty Liver Disease

(2019) Jeffrey B. Schwimmer et al.   GASTROENTEROLOGY

Gut microbiota adaptation to high altitude in indigenous animals

(2019) Yan Ma et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Natural diets promote retention of the native gut microbiota in captive rodents

(2019) Rodolfo Martínez-Mota et al.   ISME Journal

Microbial degradation of halogenated aromatics: molecular mechanisms and enzymatic reactions

(2019) Panu Pimviriyakul et al.   Microbial Biotechnology

Diet simplification selects for high gut microbial diversity and strong fermenting ability in high-altitude pikas

(2018) Huan Li et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The Akkermansia muciniphila is a gut microbiota signature in psoriasis

(2018) LiRong Tan et al.   EXPERIMENTAL DERMATOLOGY

Host contributes to longitudinal diversity of fecal microbiota in swine selected for lean growth

(2018) Duc Lu et al.   Microbiome

Potential Mechanism of Detoxification of Cyanide Compounds by Gut Microbiomes of Bamboo-Eating Pandas

(2018) Lifeng Zhu et al.   mSphere

US Immigration Westernizes the Human Gut Microbiome

(2018) Pajau Vangay et al.   CELL

Resilience of human gut microbial communities for the long stay with multiple dietary shifts

(2018) Hong Liu et al.   GUT

Identification of an Intestinal Microbiota Signature Associated With Severity of Irritable Bowel Syndrome

(2017) Julien Tap et al.   GASTROENTEROLOGY

Stress and stability: applying the Anna Karenina principle to animal microbiomes

(2017) Jesse R. Zaneveld et al.   Nature Microbiology

Enterotypes in the landscape of gut microbial community composition

(2017) Paul I. Costea et al.   Nature Microbiology

Convergent Evolution of Rumen Microbiomes in High-Altitude Mammals

(2016) Zhigang Zhang et al.   CURRENT BIOLOGY

Pika Gut May Select for Rare but Diverse Environmental Bacteria

(2016) Huan Li et al.   Frontiers in Microbiology

Pika Population Density Is Associated with the Composition and Diversity of Gut Microbiota

(2016) Huan Li et al.   Frontiers in Microbiology

Intestinal Short Chain Fatty Acids and their Link with Diet and Human Health

(2016) David Ríos-Covián et al.   Frontiers in Microbiology

Characterising the interspecific variations and convergence of gut microbiota in Anseriformes herbivores at wintering areas

(2016) Yuzhan Yang et al.   Scientific Reports

Two gut community enterotypes recur in diverse bumblebee species

(2015) Jilian Li et al.   CURRENT BIOLOGY

Stability of the gorilla microbiome despite simian immunodeficiency virus infection

(2015) Andrew H. Moeller et al.   MOLECULAR ECOLOGY

Temporal and technical variability of human gut metagenomes

(2015) Anita Y Voigt et al.   GENOME BIOLOGY

Effects of two different blends of naturally mycotoxin-contaminated maize meal on growth and metabolic profile in replacement heifers

(2014) F. Abeni et al.   Animal

Effects of Season and Host Physiological State on the Diversity, Density, and Activity of the Arctic Ground Squirrel Cecal Microbiota

(2014) Timothy J. Stevenson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Gut microbes of mammalian herbivores facilitate intake of plant toxins

(2014) Kevin D. Kohl et al.   ECOLOGY LETTERS

Effect of Swainsonine in Oxytropis kansuensis on Golgi α-Mannosidase II Expression in the Brain Tissues of Sprague–Dawley Rats

(2014) Hao Lu et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

ForceAtlas2, a Continuous Graph Layout Algorithm for Handy Network Visualization Designed for the Gephi Software

(2014) Mathieu Jacomy et al.   PLoS One

Rapid changes in the gut microbiome during human evolution

(2014) Andrew H. Moeller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice

(2014) Jun Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Exploration of bacterial community classes in major human habitats

(2014) Yanjiao Zhou et al.   GENOME BIOLOGY

A targeted metabolomic protocol for short-chain fatty acids and branched-chain amino acids

(2013) Xiaojiao Zheng et al.   Metabolomics

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Gut Microbiomes of Malawian Twin Pairs Discordant for Kwashiorkor

(2013) M. I. Smith et al.   SCIENCE

Investigation of the koala (Phascolarctos cinereus) hindgut microbiome via 16S pyrosequencing

(2013) Christopher J. Barker et al.   VETERINARY MICROBIOLOGY

A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets

(2013) Omry Koren et al.   PLoS Computational Biology

Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice

(2013) Falk Hildebrand et al.   GENOME BIOLOGY

Experience matters: prior exposure to plant toxins enhances diversity of gut microbes in herbivores

(2012) Kevin D. Kohl et al.   ECOLOGY LETTERS

Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon

(2012) Xiaolei Ze et al.   ISME Journal

A metagenome-wide association study of gut microbiota in type 2 diabetes

(2012) Junjie Qin et al.   NATURE

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

Host-Gut Microbiota Metabolic Interactions

(2012) J. K. Nicholson et al.   SCIENCE

Metabolic adaptation to a high-fat diet is associated with a change in the gut microbiota

(2011) Matteo Serino et al.   GUT

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

Comparative analysis of microbial diversity in Longitarsus flea beetles (Coleoptera: Chrysomelidae)

(2010) Scott T. Kelley et al.   GENETICA

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation

(2010) L. Dethlefsen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA:acetate CoA-transferase gene

(2009) Petra Louis et al.   ENVIRONMENTAL MICROBIOLOGY

Livestock grazing, plateau pikas and the conservation of avian biodiversity on the Tibetan plateau

(2008) Anthony D. Arthur et al.   BIOLOGICAL CONSERVATION