Tissue-specific developmental regulation and isoform usage underlie the role of doublesex in sex differentiation and mimicry in Papilio swallowtails

The PSIPRED Protein Analysis Workbench: 20 years on

(2019) Daniel W A Buchan et al.   NUCLEIC ACIDS RESEARCH

Genetic architecture and sex-specific selection govern modular, male-biased evolution of doublesex

(2019) Saurav Baral et al.   Science Advances

Hemimetabolous insects elucidate the origin of sexual development via alternative splicing

(2019) Judith Wexler et al.   eLife

Beetle horns evolved from wing serial homologs

(2019) Yonggang Hu et al.   SCIENCE

Do juvenile developmental and adult body characteristics differ among genotypes at the doublesex locus that controls female-limited Batesian mimicry polymorphism in Papilio memnon ?: A test for the “cost of mimicry” hypothesis

(2018) Shinya Komata et al.   JOURNAL OF INSECT PHYSIOLOGY

Macroevolutionary shifts ofWntAfunction potentiate butterfly wing-pattern diversity

(2017) Anyi Mazo-Vargas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Taxon-restricted genes at the origin of a novel trait allowing access to a new environment

(2017) M. Emília Santos et al.   SCIENCE

Mimicry in butterflies: co-option and a bag of magnificent developmental genetic tricks

(2017) Riddhi Deshmukh et al.   Wiley Interdisciplinary Reviews-Developmental Biology

Identification and functional analyses of sex determination genes in the sexually dimorphic stag beetle Cyclommatus metallifer

(2016) Hiroki Gotoh et al.   BMC GENOMICS

Doublesex Regulates the Connectivity of a Neural Circuit Controlling Drosophila Male Courtship Song

(2016) Troy R. Shirangi et al.   DEVELOPMENTAL CELL

The gene cortex controls mimicry and crypsis in butterflies and moths

(2016) Nicola J. Nadeau et al.   NATURE

Evolution of Social Insect Polyphenism Facilitated by the Sex Differentiation Cascade

(2016) Antonia Klein et al.   PLoS Genetics

Molecular cloning and functional characterization of the sex-determination gene doublesex in the sexually dimorphic broad-horned beetle Gnatocerus cornutus (Coleoptera, Tenebrionidae)

(2016) Hiroki Gotoh et al.   Scientific Reports

Double nexus--Doublesex is the connecting element in sex determination

(2015) E. C. Verhulst et al.   Briefings in Functional Genomics

A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly

(2015) Hideki Nishikawa et al.   NATURE GENETICS

Constraints on the evolution of adoublesextarget gene arising from doublesex’s pleiotropic deployment

(2015) Shengzhan D. Luo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Heatmap3: an improved heatmap package with more powerful and convenient features

(2014) Shilin Zhao et al.   BMC BIOINFORMATICS

doublesex is a mimicry supergene

(2014) K. Kunte et al.   NATURE

Identification of the key stages for sex determination in the silkworm, Bombyx mori

(2013) Hiroki Sakai et al.   DEVELOPMENT GENES AND EVOLUTION

The role of doublesex in the evolution of exaggerated horns in the Japanese rhinoceros beetle

(2013) Yuta Ito et al.   EMBO REPORTS

OnTheFly: a database ofDrosophila melanogastertranscription factors and their binding sites

(2013) Shula Shazman et al.   NUCLEIC ACIDS RESEARCH

Insights into insect wing origin provided by functional analysis of vestigial in the red flour beetle, Tribolium castaneum

(2013) C. M. Clark-Hachtel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular basis of wing coloration in a Batesian mimic butterfly, Papilio polytes

(2013) Hideki Nishikawa et al.   Scientific Reports

Gene regulatory networks reused to build novel traits

(2012) Antónia Monteiro   BIOESSAYS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

doublesex Functions Early and Late in Gustatory Sense Organ Development

(2012) David J. Mellert et al.   PLoS One

Diversification of complex butterfly wing patterns by repeated regulatory evolution of a Wnt ligand

(2012) A. Martin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Single Origin for Nymphalid Butterfly Eyespots Followed by Widespread Loss of Associated Gene Expression

(2012) Jeffrey C. Oliver et al.   PLoS Genetics

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

optix Drives the Repeated Convergent Evolution of Butterfly Wing Pattern Mimicry

(2011) R. D. Reed et al.   SCIENCE

Evolution of Sex-Specific Traits through Changes in HOX-Dependent doublesex Expression

(2011) Kohtaro Tanaka et al.   PLOS BIOLOGY

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

Repeated Co-options of Exoskeleton Formation during Wing-to-Elytron Evolution in Beetles

(2009) Yoshinori Tomoyasu et al.   CURRENT BIOLOGY

Wings, Horns, and Butterfly Eyespots: How Do Complex Traits Evolve?

(2009) Antónia Monteiro et al.   PLOS BIOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

The Regulation and Evolution of a Genetic Switch Controlling Sexually Dimorphic Traits in Drosophila

(2008) Thomas M. Williams et al.   CELL