Taxon-restricted genes at the origin of a novel trait allowing access to a new environment

Diversity in Morphology and Locomotory Behavior Is Associated with Niche Expansion in the Semi-aquatic Bugs

(2016) Antonin J.J. Crumière et al.   CURRENT BIOLOGY

Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling

(2016) Richard W. R. Wallbank et al.   PLOS BIOLOGY

Integrating evo-devo with ecology for a better understanding of phenotypic evolution

(2015) M. Emilia Santos et al.   Briefings in Functional Genomics

Co-option of an Ancestral Hox-Regulated Network Underlies a Recently Evolved Morphological Novelty

(2015) William J. Glassford et al.   DEVELOPMENTAL CELL

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Emergence of tissue sensitivity to Hox protein levels underlies the evolution of an adaptive morphological trait

(2014) Peter Nagui Refki et al.   DEVELOPMENTAL BIOLOGY

Large-Scale Coding Sequence Change Underlies the Evolution of Postdevelopmental Novelty in Honey Bees

(2014) William Cameron Jasper et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenomics resolves the timing and pattern of insect evolution

(2014) B. Misof et al.   SCIENCE

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Checklist, taxonomy and distribution of the Rhagovelia Mayr, 1865 (Hemiptera: Heteroptera: Veliidae) of the Americas

(2013) DORA NANCY PADILLA-GIL et al.   ZOOTAXA

Gene regulatory networks reused to build novel traits

(2012) Antónia Monteiro   BIOESSAYS

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The evolutionary origin of orphan genes

(2011) Diethard Tautz et al.   NATURE REVIEWS GENETICS

Evolutionary novelties

(2010) Günter P. Wagner et al.   CURRENT BIOLOGY

Origins, evolution, and phenotypic impact of new genes

(2010) H. Kaessmann   GENOME RESEARCH

Eye evolution and the origin of Darwin's eye prototype

(2010) Walter Gehring et al.   ITALIAN JOURNAL OF ZOOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Genetic Redundancy: New Tricks for Old Genes

(2009) Ran Kafri et al.   CELL

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

What, if Anything, Is an Evolutionary Novelty?

(2009) Massimo Pigliucci   PHILOSOPHY OF SCIENCE

More than just orphans: are taxonomically-restricted genes important in evolution?

(2009) Konstantin Khalturin et al.   TRENDS IN GENETICS

Evolution of a Novel Appendage Ground Plan in Water Striders Is Driven by Changes in the Hox Gene Ultrabithorax

(2009) Abderrahman Khila et al.   PLoS Genetics

Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

(2008) Sean B. Carroll   CELL

RESURRECTING THE ROLE OF TRANSCRIPTION FACTOR CHANGE IN DEVELOPMENTAL EVOLUTION

(2008) Vincent J. Lynch et al.   EVOLUTION

Development and evolution of insect pigmentation: Genetic mechanisms and the potential consequences of pleiotropy

(2008) Patricia J. Wittkopp et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY