Multi-omics analysis reveals the influence of genetic and environmental risk factors on developing gut microbiota in infants at risk of celiac disease

Bacteroides vulgatus and Bacteroides dorei Reduce Gut Microbial Lipopolysaccharide Production and Inhibit Atherosclerosis

(2019) Naofumi Yoshida et al.   CIRCULATION

The Immunomodulatory Effect of Alpha-Lipoic Acid in Autoimmune Diseases

(2019) Wei Liu et al.   Biomed Research International

Breaking Down Barriers: How Understanding Celiac Disease Pathogenesis Informed the Development of Novel Treatments

(2019) Francesco Valitutti et al.   DIGESTIVE DISEASES AND SCIENCES

Infants born to mothers with IBD present with altered gut microbiome that transfers abnormalities of the adaptive immune system to germ-free mice

(2019) Joana Torres et al.   GUT

Alterations of gut microbiome in autoimmune hepatitis

(2019) Yiran Wei et al.   GUT

Stunted microbiota and opportunistic pathogen colonization in caesarean-section birth

(2019) Yan Shao et al.   NATURE

Blood metabolome predicts gut microbiome α-diversity in humans

(2019) Tomasz Wilmanski et al.   NATURE BIOTECHNOLOGY

Microbial Metabolism Modulates Antibiotic Susceptibility within the Murine Gut Microbiome

(2019) Damien J. Cabral et al.   Cell Metabolism

Intestinal Dysbiosis Featuring Abundance of Ruminococcus gnavus Associates With Allergic Diseases in Infants

(2018) Huey-Huey Chua et al.   GASTROENTEROLOGY

MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis

(2018) Jasmine Chong et al.   NUCLEIC ACIDS RESEARCH

Early fecal microbiota composition in children who later develop celiac disease and associated autoimmunity

(2018) Anniina Rintala et al.   SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY

Gut microbiota trajectory in early life may predict development of celiac disease

(2018) Marta Olivares et al.   Microbiome

A metagenomic study of the gut microbiome in Behcet’s disease

(2018) Zi Ye et al.   Microbiome

The human gut microbiome in early-onset type 1 diabetes from the TEDDY study

(2018) Tommi Vatanen et al.   NATURE

Temporal development of the gut microbiome in early childhood from the TEDDY study

(2018) Christopher J. Stewart et al.   NATURE

Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential

(2018) Linda Wampach et al.   Nature Communications

Value of IgA tTG in Predicting Mucosal Recovery in Children With Celiac Disease on a Gluten-Free Diet

(2017) Maureen M. Leonard et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

Catechins and Their Therapeutic Benefits to Inflammatory Bowel Disease

(2017) Fei-Yan Fan et al.   MOLECULES

Erythritol is a pentose-phosphate pathway metabolite and associated with adiposity gain in young adults

(2017) Katie C. Hootman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Folate Cycle As a Cause of Natural Killer Cell Dysfunction and Viral Etiology in Type 1 Diabetes

(2017) Allison L. Bayer et al.   Frontiers in Endocrinology

Biotin deficiency enhances the inflammatory response of human dendritic cells

(2016) Sudhanshu Agrawal et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

Gut microbiome analysis in neuromyelitis optica reveals overabundance ofClostridium perfringens

(2016) Bruce A. C. Cree et al.   ANNALS OF NEUROLOGY

MultiQC: summarize analysis results for multiple tools and samples in a single report

(2016) Philip Ewels et al.   BIOINFORMATICS

Colonic inflammation accompanies an increase of β-catenin signaling and Lachnospiraceae / Streptococcaceae bacteria in the hind gut of high-fat diet-fed mice

(2016) Huawei Zeng et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

The microbiome in early life: implications for health outcomes

(2016) Sabrina Tamburini et al.   NATURE MEDICINE

Targeting demyelination and virtual hypoxia with high-dose biotin as a treatment for progressive multiple sclerosis

(2016) Frédéric Sedel et al.   NEUROPHARMACOLOGY

Cross-talk among flesh-eatingAeromonas hydrophilastrains in mixed infection leading to necrotizing fasciitis

(2016) Duraisamy Ponnusamy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Antibiotics, birth mode, and diet shape microbiome maturation during early life

(2016) Nicholas A. Bokulich et al.   Science Translational Medicine

Alterations of the human gut microbiome in multiple sclerosis

(2016) Sushrut Jangi et al.   Nature Communications

Methane limit LPS-induced NF-κB/MAPKs signal in macrophages and suppress immune response in mice by enhancing PI3K/AKT/GSK-3β-mediated IL-10 expression

(2016) Xu Zhang et al.   Scientific Reports

Genetics of celiac disease

(2015) Isis Ricaño-Ponce et al.   BEST PRACTICE & RESEARCH IN CLINICAL GASTROENTEROLOGY

Celiac disease from a global perspective

(2015) Elena Lionetti et al.   BEST PRACTICE & RESEARCH IN CLINICAL GASTROENTEROLOGY

Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life

(2015) Fredrik Bäckhed et al.   Cell Host & Microbe

Celiac Disease Genomic, Environmental, Microbiome, and Metabolomic (CDGEMM) Study Design: Approach to the Future of Personalized Prevention of Celiac Disease

(2015) Maureen Leonard et al.   Nutrients

The Influence of the Autoimmunity-Associated Ancestral HLA Haplotype AH8.1 on the Human Gut Microbiota: A Cross-Sectional Study

(2015) Johannes R. Hov et al.   PLoS One

Incidence and Prevalence of Celiac Disease and Dermatitis Herpetiformis in the UK Over Two Decades: Population-Based Study

(2014) Joe West et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Antibiotics Associated With Increased Risk of New-Onset Crohn’s Disease But Not Ulcerative Colitis: A Meta-Analysis

(2014) Ryan Ungaro et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Follow-up of pediatric celiac disease: value of antibodies in predicting mucosal healing, a prospective cohort study

(2014) Edith Vécsei et al.   BMC GASTROENTEROLOGY

The HLA-DQ2 genotype selects for early intestinal microbiota composition in infants at high risk of developing coeliac disease

(2014) M Olivares et al.   GUT

Intestinal Colonization by a Lachnospiraceae Bacterium Contributes to the Development of Diabetes in Obese Mice

(2014) Keishi Kameyama et al.   MICROBES AND ENVIRONMENTS

Introduction of Gluten, HLA Status, and the Risk of Celiac Disease in Children

(2014) Elena Lionetti et al.   NEW ENGLAND JOURNAL OF MEDICINE

Randomized Feeding Intervention in Infants at High Risk for Celiac Disease

(2014) Sabine L. Vriezinga et al.   NEW ENGLAND JOURNAL OF MEDICINE

Microbial Community Profiling of Human Saliva Using Shotgun Metagenomic Sequencing

(2014) Nur A. Hasan et al.   PLoS One

Microbial Exposure in Infancy and Subsequent Appearance of Type 1 Diabetes Mellitus–Associated Autoantibodies

(2014) Suvi M. Virtanen et al.   JAMA Pediatrics

Antibiotic exposure and the development of coeliac disease: a nationwide case–control study

(2013) Karl Mårild et al.   BMC GASTROENTEROLOGY

Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation

(2013) Nicholas Arpaia et al.   NATURE

Systematic review: early infant feeding and the prevention of coeliac disease

(2012) H. Szajewska et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

The anti-inflammatory effects of methane*

(2012) Mihály Boros et al.   CRITICAL CARE MEDICINE

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Proof of Concept of Microbiome-Metabolome Analysis and Delayed Gluten Exposure on Celiac Disease Autoimmunity in Genetically At-Risk Infants

(2012) Maria Sellitto et al.   PLoS One

Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome

(2012) Sahar Abubucker et al.   PLoS Computational Biology

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

(2012) Xochitl C Morgan et al.   GENOME BIOLOGY

Influence of Environmental and Genetic Factors Linked to Celiac Disease Risk on Infant Gut Colonization by Bacteroides Species

(2011) Ester Sánchez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pregnancy Outcome and Risk of Celiac Disease in Offspring: A Nationwide Case-Control Study

(2011) Karl Mårild et al.   GASTROENTEROLOGY

Mucosal Recovery and Mortality in Adults With Celiac Disease After Treatment With a Gluten-Free Diet

(2010) Alberto Rubio-Tapia et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Natural history of celiac disease autoimmunity in a USA cohort followed since 1974

(2010) Carlo Catassi et al.   ANNALS OF MEDICINE

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Occupational silica exposure as a risk factor for scleroderma: a meta-analysis

(2010) Zachary D. McCormic et al.   INTERNATIONAL ARCHIVES OF OCCUPATIONAL AND ENVIRONMENTAL HEALTH

Cesarean Delivery Is Associated With Celiac Disease but Not Inflammatory Bowel Disease in Children

(2010) E. Decker et al.   PEDIATRICS

Altered early infant gut microbiota in children developing allergy up to 5 years of age

(2009) Y. M. Sjögren et al.   CLINICAL AND EXPERIMENTAL ALLERGY

Dysregulation of lipid and amino acid metabolism precedes islet autoimmunity in children who later progress to type 1 diabetes

(2008) Matej Orešič et al.   JOURNAL OF EXPERIMENTAL MEDICINE