miRNAs Predicted to Regulate Host Anti-viral Gene Pathways in IPNV-Challenged Atlantic Salmon Fry Are Affected by Viral Load, and Associated With the Major IPN Resistance QTL Genotypes in Late Infection

Expanding the miRNA Repertoire in Atlantic Salmon; Discovery of IsomiRs and miRNAs Highly Expressed in Different Tissues and Developmental Stages

(2019) Nardos Woldemariam et al.   Cells

Salmon cells SHK‐1 internalize infectious pancreatic necrosis virus by macropinocytosis

(2019) Jorge Levicán‐Asenjo et al.   JOURNAL OF FISH DISEASES

The role of type I interferons in innate and adaptive immunity against viruses in Atlantic salmon

(2018) Børre Robertsen   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Necroptosis in anti-viral inflammation

(2018) Himani Nailwal et al.   CELL DEATH AND DIFFERENTIATION

SIKE of black carp is a substrate of TBK1 and suppresses TBK1-mediated antiviral signaling

(2018) Jun Li et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

UniProt: a worldwide hub of protein knowledge

(2018)   NUCLEIC ACIDS RESEARCH

miRBase: from microRNA sequences to function

(2018) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Non-coding RNAs Function as Immune Regulators in Teleost Fish

(2018) Man Wang et al.   Frontiers in Immunology

miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions

(2017) Chih-Hung Chou et al.   NUCLEIC ACIDS RESEARCH

Gene expression comparison of resistant and susceptible Atlantic salmon fry challenged with Infectious Pancreatic Necrosis virus reveals a marked contrast in immune response

(2016) Diego Robledo et al.   BMC GENOMICS

Fish interferon-stimulated genes: The antiviral effectors

(2016) Sarah J. Poynter et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

The Atlantic salmon genome provides insights into rediploidization

(2016) Sigbjørn Lien et al.   NATURE

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

De Novo Transcriptome Analysis Shows That SAV-3 Infection Upregulates Pattern Recognition Receptors of the Endosomal Toll-Like and RIG-I-Like Receptor Signaling Pathways in Macrophage/Dendritic Like TO-Cells

(2016) Cheng Xu et al.   Viruses-Basel

Viral manipulation of the host immune response

(2015) Allison Christiaansen et al.   CURRENT OPINION IN IMMUNOLOGY

Differential immune gene expression profiles in susceptible and resistant full-sibling families of Atlantic salmon ( Salmo salar ) challenged with infectious pancreatic necrosis virus (IPNV)

(2015) Felipe E. Reyes-López et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Epithelial Cadherin Determines Resistance to Infectious Pancreatic Necrosis Virus in Atlantic Salmon

(2015) Thomas Moen et al.   GENETICS

MicroRNAs in apoptosis, autophagy and necroptosis

(2015) Zhenyi Su et al.   Oncotarget

Epithelial Cadherin Determines Resistance to Infectious Pancreatic Necrosis Virus in Atlantic Salmon

(2015) Thomas Moen et al.   GENETICS

MicroRNA as Type I Interferon-Regulated Transcripts and Modulators of the Innate Immune Response

(2015) Samuel C. Forster et al.   Frontiers in Immunology

Ward’s Hierarchical Agglomerative Clustering Method: Which Algorithms Implement Ward’s Criterion?

(2014) Fionn Murtagh et al.   JOURNAL OF CLASSIFICATION

Whole-genome duplication in teleost fishes and its evolutionary consequences

(2014) Stella M. K. Glasauer et al.   MOLECULAR GENETICS AND GENOMICS

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Two Types of TNF-  Exist in Teleost Fish: Phylogeny, Expression, and Bioactivity Analysis of Type-II TNF- 3 in Rainbow Trout Oncorhynchus mykiss

(2013) S. Hong et al.   JOURNAL OF IMMUNOLOGY

MicroRNAs as mediators of viral evasion of the immune system

(2013) Bryan R Cullen   NATURE IMMUNOLOGY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

MicroRNAs in the regulation of TLR and RIG-I pathways

(2012) Yingke Li et al.   Cellular & Molecular Immunology

miRNA-Mediated Gene Silencing by Translational Repression Followed by mRNA Deadenylation and Decay

(2012) S. Djuranovic et al.   SCIENCE

Identification of genes involved in immune response of Atlantic salmon (Salmo salar) to IPN virus infection, using expressed sequence tag (EST) analysis

(2011) Victoria Cepeda et al.   AQUACULTURE

MicroRNA regulation of innate immune responses in epithelial cells

(2011) Rui Zhou et al.   Cellular & Molecular Immunology

Chemokines in teleost fish species

(2011) Alí Alejo et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

IPNV modulation of pro and anti-inflammatory cytokine expression in Atlantic salmon might help the establishment of infection and persistence

(2011) Sebastián Reyes-Cerpa et al.   FISH & SHELLFISH IMMUNOLOGY

MyD88 Interacts with Interferon Regulatory Factor (IRF) 3 and IRF7 in Atlantic Salmon (Salmo salar)

(2011) Dimitar B. Iliev et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Detection of Infectious Pancreatic Necrosis Virus in Subclinically Infected Atlantic Salmon by Virus Isolation in Cell Culture or Real-Time Reverse Transcription Polymerase Chain Reaction: Influence of Sample Preservation and Storage

(2011) Irene Ørpetveit et al.   JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION

Genomic survey of early responses to viruses in Atlantic salmon, Salmo salar L.

(2011) Aleksei Krasnov et al.   MOLECULAR IMMUNOLOGY

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

(2011) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

IPNV with high and low virulence: host immune responses and viral mutations during infection

(2011) Astrid Skjesol et al.   Virology Journal

Viruses, microRNAs, and Host Interactions

(2010) Rebecca L. Skalsky et al.   Annual Review of Microbiology

Differentially expressed genes following persistent infection with infectious pancreatic necrosis virus in vitro and in vivo

(2010) Inderjit S. Marjara et al.   FISH & SHELLFISH IMMUNOLOGY

Regulation and function of interferon regulatory factors of Atlantic salmon

(2010) Veronica Bergan et al.   MOLECULAR IMMUNOLOGY

The widespread regulation of microRNA biogenesis, function and decay

(2010) Jacek Krol et al.   NATURE REVIEWS GENETICS

miRTarBase: a database curates experimentally validated microRNA–target interactions

(2010) Sheng-Da Hsu et al.   NUCLEIC ACIDS RESEARCH

Confirmation and fine-mapping of a major QTL for resistance to infectious pancreatic necrosis in Atlantic salmon (Salmo salar): population-level associations between markers and trait

(2009) Thomas Moen et al.   BMC GENOMICS

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

microRNAs and the immune response

(2009) Eleni Tsitsiou et al.   CURRENT OPINION IN PHARMACOLOGY

The susceptibility of Atlantic salmon fry to freshwater infectious pancreatic necrosis is largely explained by a major QTL

(2009) R D Houston et al.   HEREDITY

The cell-cell adhesion molecule E-cadherin

(2008) F. van Roy et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Expression of interferon and interferon-induced genes in salmonids in response to virus infection, interferon-inducing compounds and vaccination

(2008) Børre Robertsen   FISH & SHELLFISH IMMUNOLOGY

Major Quantitative Trait Loci Affect Resistance to Infectious Pancreatic Necrosis in Atlantic Salmon (Salmo salar)

(2008) R. D. Houston et al.   GENETICS

Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?

(2008) Witold Filipowicz et al.   NATURE REVIEWS GENETICS

MicroRNAs and immunity: Novel players in the regulation of normal immune function and inflammation

(2008) Enikö Sonkoly et al.   SEMINARS IN CANCER BIOLOGY

Double-stranded RNA- and CpG DNA-induced immune responses in Atlantic salmon: Comparison and synergies

(2008) Guro Strandskog et al.   VACCINE