Molecular simulations unravel the molecular principles that mediate selective permeability of carboxysome shell protein

Decoding the stoichiometric composition and organisation of bacterial metabolosomes

(2020) Mengru Yang et al.   Nature Communications

Rubisco accumulation factor 1 (Raf1) plays essential roles in mediating Rubisco assembly and carboxysome biogenesis

(2020) Fang Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Self-Assembly Stability and Variability of Bacterial Microcompartment Shell Proteins in Response to the Environmental Change

(2019) Matthew Faulkner et al.   Nanoscale Research Letters

Single-organelle quantification reveals the stoichiometric and structural variability of carboxysomes dependent on the environment

(2019) Yaqi Sun et al.   PLANT CELL

Bacterial microcompartments

(2018) Cheryl A. Kerfeld et al.   NATURE REVIEWS MICROBIOLOGY

A Generic Self-Assembly Process in Microcompartments and Synthetic Protein Nanotubes

(2018) Ismail Uddin et al.   Small

Engineering and Modulating Functional Cyanobacterial CO2-Fixing Organelles

(2018) Yi Fang et al.   Frontiers in Plant Science

Selective Permeability of Carboxysome Shell Pores to Anionic Molecules

(2018) Paween Mahinthichaichan et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Roles of RbcX in Carboxysome Biosynthesis in the Cyanobacterium Synechococcus elongatus PCC7942

(2018) Fang Huang et al.   PLANT PHYSIOLOGY

Constant-pH Molecular Dynamics Simulations for Large Biomolecular Systems

(2017) Brian K. Radak et al.   Journal of Chemical Theory and Computation

Crystal structures of β-carboxysome shell protein CcmP: ligand binding correlates with the closed or open central pore

(2017) Anna M Larsson et al.   JOURNAL OF EXPERIMENTAL BOTANY

Molecular Dynamics Simulations of Selective Metabolite Transport across the Propanediol Bacterial Microcompartment Shell

(2017) Jiyong Park et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Dissecting the Native Architecture and Dynamics of Cyanobacterial Photosynthetic Machinery

(2017) Selene Casella et al.   Molecular Plant

Direct characterization of the native structure and mechanics of cyanobacterial carboxysomes

(2017) Matthew Faulkner et al.   Nanoscale

Assembly principles and structure of a 6.5-MDa bacterial microcompartment shell

(2017) Markus Sutter et al.   SCIENCE

Assembly, function and evolution of cyanobacterial carboxysomes

(2016) Cheryl A Kerfeld et al.   CURRENT OPINION IN PLANT BIOLOGY

Light Modulates the Biosynthesis and Organization of Cyanobacterial Carbon Fixation Machinery through Photosynthetic Electron Flow

(2016) Yaqi Sun et al.   PLANT PHYSIOLOGY

Bacterial microcompartments: widespread prokaryotic organelles for isolation and optimization of metabolic pathways

(2015) Thomas A. Bobik et al.   MOLECULAR MICROBIOLOGY

Visualization of Bacterial Microcompartment Facet Assembly Using High-Speed Atomic Force Microscopy

(2015) Markus Sutter et al.   NANO LETTERS

Transgenic tobacco plants with improved cyanobacterial Rubisco expression but no extra assembly factors grow at near wild-type rates if provided with elevated CO2

(2015) Alessandro Occhialini et al.   PLANT JOURNAL

Selective molecular transport through the protein shell of a bacterial microcompartment organelle

(2015) Chiranjit Chowdhury et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial microcompartments and the modular construction of microbial metabolism

(2015) Cheryl A. Kerfeld et al.   TRENDS IN MICROBIOLOGY

The near-atomic cryoEM structure of a flexible filamentous plant virus shows homology of its coat protein with nucleoproteins of animal viruses

(2015) Xabier Agirrezabala et al.   eLife

Structural Disorder in Viral Proteins

(2014) Bin Xue et al.   CHEMICAL REVIEWS

Free Energies from Dynamic Weighted Histogram Analysis Using Unbiased Markov State Model

(2014) Edina Rosta et al.   Journal of Chemical Theory and Computation

Assembly of Robust Bacterial Microcompartment Shells Using Building Blocks from an Organelle of Unknown Function

(2014) Jonathan K. Lassila et al.   JOURNAL OF MOLECULAR BIOLOGY

A faster Rubisco with potential to increase photosynthesis in crops

(2014) Myat T. Lin et al.   NATURE

β-Carboxysomal proteins assemble into highly organized structures inNicotianachloroplasts

(2014) Myat T. Lin et al.   PLANT JOURNAL

Engineering Bacterial Microcompartment Shells: Chimeric Shell Proteins and Chimeric Carboxysome Shells

(2014) Fei Cai et al.   ACS Synthetic Biology

The Structure of CcmP, a Tandem Bacterial Microcompartment Domain Protein from the β-Carboxysome, Forms a Subcompartment Within a Microcompartment

(2013) Fei Cai et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data

(2013) Daniel R. Roe et al.   Journal of Chemical Theory and Computation

CHARMM36 all-atom additive protein force field: Validation based on comparison to NMR data

(2013) Jing Huang et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Functions, Compositions, and Evolution of the Two Types of Carboxysomes: Polyhedral Microcompartments That Facilitate CO2 Fixation in Cyanobacteria and Some Proteobacteria

(2013) B. D. Rae et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Control of electron transport routes through redox-regulated redistribution of respiratory complexes

(2012) L.-N. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The protein shells of bacterial microcompartment organelles

(2011) Todd O Yeates et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

SwissDock, a protein-small molecule docking web service based on EADock DSS

(2011) A. Grosdidier et al.   NUCLEIC ACIDS RESEARCH

Comparative analysis of carboxysome shell proteins

(2011) James N. Kinney et al.   PHOTOSYNTHESIS RESEARCH

Modularity of a carbon-fixing protein organelle

(2011) W. Bonacci et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

The Carboxysome Shell Is Permeable to Protons

(2010) B. B. Menon et al.   JOURNAL OF BACTERIOLOGY

Structure and Mechanisms of a Protein-Based Organelle in Escherichia coli

(2010) S. Tanaka et al.   SCIENCE

Identification and Structural Analysis of a Novel Carboxysome Shell Protein with Implications for Metabolite Transport

(2009) Michael G. Klein et al.   JOURNAL OF MOLECULAR BIOLOGY

The Pentameric Vertex Proteins Are Necessary for the Icosahedral Carboxysome Shell to Function as a CO2 Leakage Barrier

(2009) Fei Cai et al.   PLoS One

Two-dimensional crystals of carboxysome shell proteins recapitulate the hexagonal packing of three-dimensional crystals

(2009) Kelly A. Dryden et al.   PROTEIN SCIENCE

CO2Fixation Kinetics ofHalothiobacillus neapolitanusMutant Carboxysomes Lacking Carbonic Anhydrase Suggest the Shell Acts as a Diffusional Barrier for CO2

(2008) Zhicheng Dou et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

CHARMM-GUI: A web-based graphical user interface for CHARMM

(2008) Sunhwan Jo et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Protein-based organelles in bacteria: carboxysomes and related microcompartments

(2008) Todd O. Yeates et al.   NATURE REVIEWS MICROBIOLOGY

Atomic-Level Models of the Bacterial Carboxysome Shell

(2008) S. Tanaka et al.   SCIENCE