Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors
出版年份 2020 全文链接
标题
Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors
作者
关键词
-
出版物
Nature Communications
Volume 11, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-10-09
DOI
10.1038/s41467-020-18832-8
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Tissue‐specific Hi‐C analyses of rice, foxtail millet and maize suggest non‐canonical function of plant chromatin domains
- (2019) Pengfei Dong et al. Journal of Integrative Plant Biology
- A k-mer grammar analysis to uncover maize regulatory architecture
- (2019) María Katherine Mejía-Guerra et al. BMC PLANT BIOLOGY
- Dysregulation of expression correlates with rare-allele burden and fitness loss in maize
- (2018) Karl A. G. Kremling et al. NATURE
- Transcriptional regulation of nitrogen-associated metabolism and growth
- (2018) Allison Gaudinier et al. NATURE
- A Maize Gene Regulatory Network for Phenolic Metabolism
- (2017) Fan Yang et al. Molecular Plant
- 3D Chromatin Architecture of Large Plant Genomes Determined by Local A/B Compartments
- (2017) Pengfei Dong et al. Molecular Plant
- Construction of the third-generation Zea mays haplotype map
- (2017) Robert Bukowski et al. GigaScience
- Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape
- (2016) Ronan C. O’Malley et al. CELL
- Identification of genetic variants associated with maize flowering time using an extremely large multi-genetic background population
- (2016) Yong-xiang Li et al. PLANT JOURNAL
- Flowering Time-Regulated Genes in Maize Include the Transcription Factor ZmMADS1
- (2016) Philipp Alter et al. PLANT PHYSIOLOGY
- Open chromatin reveals the functional maize genome
- (2016) Eli Rodgers-Melnick et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Integration of omic networks in a developmental atlas of maize
- (2016) J. W. Walley et al. SCIENCE
- The Plant Circadian Clock: From a Simple Timekeeper to a Complex Developmental Manager
- (2016) Sabrina E. Sanchez et al. Cold Spring Harbor Perspectives in Biology
- Making Sense of Transcription Networks
- (2015) Trevor R. Sorrells et al. CELL
- Genome-Wide Association of Carbon and Nitrogen Metabolism in the Maize Nested Association Mapping Population
- (2015) Nengyi Zhang et al. PLANT PHYSIOLOGY
- Conservation of trans-acting circuitry during mammalian regulatory evolution
- (2014) Andrew B. Stergachis et al. NATURE
- Comparative analyses of C4 and C3 photosynthesis in developing leaves of maize and rice
- (2014) Lin Wang et al. NATURE BIOTECHNOLOGY
- Transcriptional enhancers: from properties to genome-wide predictions
- (2014) Daria Shlyueva et al. NATURE REVIEWS GENETICS
- A Functional and Evolutionary Perspective on Transcription Factor Binding in Arabidopsis thaliana
- (2014) K. S. Heyndrickx et al. PLANT CELL
- Association Mapping across Numerous Traits Reveals Patterns of Functional Variation in Maize
- (2014) Jason G. Wallace et al. PLoS Genetics
- Transcription Factor Binding in Human Cells Occurs in Dense Clusters Formed around Cohesin Anchor Sites
- (2013) Jian Yan et al. CELL
- Genome-wide transcript analysis of early maize leaf development reveals gene cohorts associated with the differentiation of C4Kranz anatomy
- (2013) Peng Wang et al. PLANT JOURNAL
- Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination
- (2013) W.-Y. Liu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Circuitry and Dynamics of Human Transcription Factor Regulatory Networks
- (2012) Shane Neph et al. CELL
- Complexity in the Wiring and Regulation of Plant Circadian Networks
- (2012) Dawn H. Nagel et al. CURRENT BIOLOGY
- ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
- (2012) S. G. Landt et al. GENOME RESEARCH
- Architecture of the human regulatory network derived from ENCODE data
- (2012) Mark B. Gerstein et al. NATURE
- TIP: A probabilistic method for identifying transcription factor target genes from ChIP-seq binding profiles
- (2011) Chao Cheng et al. BIOINFORMATICS
- Epigenetic priors for identifying active transcription factor binding sites
- (2011) Gabriel Cuellar-Partida et al. BIOINFORMATICS
- Combinatorial Patterning of Chromatin Regulators Uncovered by Genome-wide Location Analysis in Human Cells
- (2011) Oren Ram et al. CELL
- Genome-wide association study of leaf architecture in the maize nested association mapping population
- (2011) Feng Tian et al. NATURE GENETICS
- The JAZ Proteins: A Crucial Interface in the Jasmonate Signaling Cascade
- (2011) Laurens Pauwels et al. PLANT CELL
- The Jasmonate-ZIM-Domain Proteins Interact with the WD-Repeat/bHLH/MYB Complexes to Regulate Jasmonate-Mediated Anthocyanin Accumulation and Trichome Initiation inArabidopsis thaliana
- (2011) Tiancong Qi et al. PLANT CELL
- The developmental dynamics of the maize leaf transcriptome
- (2010) Pinghua Li et al. NATURE GENETICS
- Inferring Regulatory Networks from Expression Data Using Tree-Based Methods
- (2010) Vân Anh Huynh-Thu et al. PLoS One
- GLK Transcription Factors Coordinate Expression of the Photosynthetic Apparatus in Arabidopsis
- (2009) M. T. Waters et al. PLANT CELL
- The Genetic Architecture of Maize Flowering Time
- (2009) E. S. Buckler et al. SCIENCE
- The B73 Maize Genome: Complexity, Diversity, and Dynamics
- (2009) P. S. Schnable et al. SCIENCE
- Power-Law Distributions in Empirical Data
- (2009) Aaron Clauset et al. SIAM REVIEW
- Predictive learning via rule ensembles
- (2008) Jerome H. Friedman et al. Annals of Applied Statistics
- Identifying functional modules in protein-protein interaction networks: an integrated exact approach
- (2008) M. T. Dittrich et al. BIOINFORMATICS
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now