Genome-wide transcript analysis of early maize leaf development reveals gene cohorts associated with the differentiation of C4Kranz anatomy

The Arabidopsis leaf provascular cell transcriptome is enriched in genes with roles in vein patterning

(2013) Neeru Gandotra et al.   PLANT JOURNAL

Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination

(2013) W.-Y. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MergeAlign: improving multiple sequence alignment performance by dynamic reconstruction of consensus multiple sequence alignments

(2012) Peter W Collingridge et al.   BMC BIOINFORMATICS

Molecular Phylogenetic and Expression Analysis of the Complete WRKY Transcription Factor Family in Maize

(2012) K.-F. Wei et al.   DNA RESEARCH

Systematic analysis of plant-specific B3 domain-containing proteins based on the genome resources of 11 sequenced species

(2012) Yijun Wang et al.   MOLECULAR BIOLOGY REPORTS

Scarecrow Plays a Role in Establishing Kranz Anatomy in Maize Leaves

(2012) Thomas L. Slewinski et al.   PLANT AND CELL PHYSIOLOGY

Ontogeny of the Maize Shoot Apical Meristem

(2012) E. M. Takacs et al.   PLANT CELL

CHIMERIC FLORAL ORGANS1, Encoding a Monocot-Specific MADS Box Protein, Regulates Floral Organ Identity in Rice

(2012) X. Sang et al.   PLANT PHYSIOLOGY

Characterizing Regulatory and Functional Differentiation between Maize Mesophyll and Bundle Sheath Cells by Transcriptomic Analysis

(2012) Y.-M. Chang et al.   PLANT PHYSIOLOGY

The Development of C4 Rice: Current Progress and Future Challenges

(2012) S. von Caemmerer et al.   SCIENCE

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize

(2011) Hongyan Xing et al.   BMC GENOMICS

PHYLOGENETIC ANALYSES UNRAVEL THE EVOLUTIONARY HISTORY OF NAC PROTEINS IN PLANTS

(2011) Tingting Zhu et al.   EVOLUTION

Modulation of plant growth by HD-Zip class I and II transcription factors in response to environmental stimuli

(2011) John C. Harris et al.   NEW PHYTOLOGIST

C4Cycles: Past, Present, and Future Research on C4Photosynthesis

(2011) Jane A. Langdale   PLANT CELL

Systems Analysis of a Maize Leaf Developmental Gradient Redefines the Current C4 Model and Provides Candidates for Regulation

(2011) T. R. Pick et al.   PLANT CELL

Evolution of C4Photosynthesis in the GenusFlaveria: How Many and Which Genes Does It Take to Make C4?

(2011) Udo Gowik et al.   PLANT CELL

Genome-Wide Direct Target Analysis Reveals a Role for SHORT-ROOT in Root Vascular Patterning through Cytokinin Homeostasis

(2011) H. Cui et al.   PLANT PHYSIOLOGY

Arabidopsis Ovate Family Proteins, a Novel Transcriptional Repressor Family, Control Multiple Aspects of Plant Growth and Development

(2011) Shucai Wang et al.   PLoS One

grassy tillers1 promotes apical dominance in maize and responds to shade signals in the grasses

(2011) C. J. Whipple et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide analysis of primary auxin-responsive Aux/IAA gene family in maize (Zea mays. L.)

(2010) Yijun Wang et al.   MOLECULAR BIOLOGY REPORTS

MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor

(2010) Alexandra Schlereth et al.   NATURE

The developmental dynamics of the maize leaf transcriptome

(2010) Pinghua Li et al.   NATURE GENETICS

Structural and Metabolic Transitions of C4 Leaf Development and Differentiation Defined by Microscopy and Quantitative Proteomics in Maize

(2010) W. Majeran et al.   PLANT CELL

An mRNA Blueprint for C4 Photosynthesis Derived from Comparative Transcriptomics of Closely Related C3 and C4 Species

(2010) A. Brautigam et al.   PLANT PHYSIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Archaeal phylogenomics provides evidence in support of a methanogenic origin of the Archaea and a thaumarchaeal origin for the eukaryotes

(2010) S. Kelly et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

MYB transcription factors in Arabidopsis

(2010) Christian Dubos et al.   TRENDS IN PLANT SCIENCE

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Signals and prepatterns: new insights into organ polarity in plants

(2009) A. Y. Husbands et al.   GENES & DEVELOPMENT

The spatial expression patterns of DROOPING LEAF orthologs suggest a conserved function in grasses

(2009) Motokazu Ishikawa et al.   GENES & GENETIC SYSTEMS

Origin and Diversification of Basic-Helix-Loop-Helix Proteins in Plants

(2009) N. Pires et al.   MOLECULAR BIOLOGY AND EVOLUTION

Dof5.6/HCA2, a Dof Transcription Factor Gene, Regulates Interfascicular Cambium Formation and Vascular Tissue Development in Arabidopsis

(2009) Y. Guo et al.   PLANT CELL

SHALLOT-LIKE1 Is a KANADI Transcription Factor That Modulates Rice Leaf Rolling by Regulating Leaf Abaxial Cell Development

(2009) G.-H. Zhang et al.   PLANT CELL

Shoot apical meristem function in Arabidopsis requires the combined activities of three BEL1-like homeodomain proteins

(2009) Bas Rutjens et al.   PLANT JOURNAL

AtbZIP34 is required for Arabidopsis pollen wall patterning and the control of several metabolic pathways in developing pollen

(2009) Antónia Gibalová et al.   PLANT MOLECULAR BIOLOGY

Transcriptional activation of the maize endosperm transfer cell-specific gene BETL1 by ZmMRP-1 is enhanced by two C2H2 zinc finger-containing proteins

(2009) Joaquín Royo et al.   PLANTA

TCP genes: a family snapshot ten years later

(2009) Mar Martín-Trillo et al.   TRENDS IN PLANT SCIENCE

Auxin Receptors and Plant Development: A New Signaling Paradigm

(2008) Keithanne Mockaitis et al.   Annual Review of Cell and Developmental Biology

Using C4 photosynthesis to increase the yield of rice—rationale and feasibility

(2008) Julian M Hibberd et al.   CURRENT OPINION IN PLANT BIOLOGY

Vein patterning screens and the defectively organized tributaries mutants in Arabidopsis thaliana

(2008) Jalean Joyanne Petricka et al.   PLANT JOURNAL