Hyperacetylated chromatin domains mark cell type-specific genes and suggest distinct modes of enhancer function
出版年份 2020 全文链接
标题
Hyperacetylated chromatin domains mark cell type-specific genes and suggest distinct modes of enhancer function
作者
关键词
-
出版物
Nature Communications
Volume 11, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-09-11
DOI
10.1038/s41467-020-18303-0
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- modEnrichr: a suite of gene set enrichment analysis tools for model organisms
- (2019) Maxim V Kuleshov et al. NUCLEIC ACIDS RESEARCH
- Enhancer Logic and Mechanics in Development and Disease
- (2018) Ryan Rickels et al. TRENDS IN CELL BIOLOGY
- Establishment of regulatory elements during erythro-megakaryopoiesis identifies hematopoietic lineage-commitment points
- (2018) Elisabeth F. Heuston et al. Epigenetics & Chromatin
- Retinal Cell Type DNA Methylation and Histone Modifications Predict Reprogramming Efficiency and Retinogenesis in 3D Organoid Cultures
- (2018) Lu Wang et al. Cell Reports
- Examining the Roles of H3K4 Methylation States with Systematically Characterized Antibodies
- (2018) Rohan N. Shah et al. MOLECULAR CELL
- Transcription factor-dependent ‘anti-repressive’ mammalian enhancers exclude H3K27me3 from extended genomic domains
- (2017) Madhurima Saxena et al. GENES & DEVELOPMENT
- The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis
- (2017) Issam Aldiri et al. NEURON
- Erythropoietin Signaling Regulates Key Epigenetic and Transcription Networks in Fetal Neural Progenitor Cells
- (2017) Christina Sollinger et al. Scientific Reports
- Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution
- (2016) Hannah K. Long et al. CELL
- Enhancers and super-enhancers have an equivalent regulatory role in embryonic stem cells through regulation of single or multiple genes
- (2016) Sakthi D. Moorthy et al. GENOME RESEARCH
- Genetic dissection of the α-globin super-enhancer in vivo
- (2016) Deborah Hay et al. NATURE GENETICS
- Convergence of Developmental and Oncogenic Signaling Pathways at Transcriptional Super-Enhancers
- (2015) Denes Hnisz et al. MOLECULAR CELL
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- H3K4me3 Breadth Is Linked to Cell Identity and Transcriptional Consistency
- (2014) Bérénice A. Benayoun et al. CELL
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis
- (2014) Weisheng Wu et al. GENOME RESEARCH
- Transcriptional enhancers: from properties to genome-wide predictions
- (2014) Daria Shlyueva et al. NATURE REVIEWS GENETICS
- Quantitative analysis of murine terminal erythroid differentiation in vivo: novel method to study normal and disordered erythropoiesis
- (2013) J. Liu et al. BLOOD
- Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation
- (2013) J. R. Alvarez-Dominguez et al. BLOOD
- Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool
- (2013) Edward Y Chen et al. BMC BIOINFORMATICS
- Stat and interferon genes identified by network analysis differentially regulate primitive and definitive erythropoiesis
- (2013) Emily Greenfest-Allen et al. BMC Systems Biology
- Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
- (2013) Warren A. Whyte et al. CELL
- Super-Enhancers in the Control of Cell Identity and Disease
- (2013) Denes Hnisz et al. CELL
- Identification of Biologically Relevant Enhancers in Human Erythroid Cells
- (2013) Mack Y. Su et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- Genome engineering using the CRISPR-Cas9 system
- (2013) F Ann Ran et al. Nature Protocols
- Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants
- (2013) S. C. J. Parker et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Ontogeny of erythroid gene expression
- (2012) P. D. Kingsley et al. BLOOD
- Combinatorial Assembly of Developmental Stage-Specific Enhancers Controls Gene Expression Programs during Human Erythropoiesis
- (2012) Jian Xu et al. DEVELOPMENTAL CELL
- Identifying ChIP-seq enrichment using MACS
- (2012) Jianxing Feng et al. Nature Protocols
- An embryonic stage-specific enhancer within the murine -globin locus mediates domain-wide histone hyperacetylation
- (2011) G. Fromm et al. BLOOD
- Functional and Mechanistic Diversity of Distal Transcription Enhancers
- (2011) Michael Bulger et al. CELL
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Discovery and characterization of chromatin states for systematic annotation of the human genome
- (2010) Jason Ernst et al. NATURE BIOTECHNOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Histone hyperacetylation within the -globin locus is context-dependent and precedes high-level gene expression
- (2009) G. Fromm et al. BLOOD
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now