Genome-wide transcriptomic analysis of a superior biomass-degrading strain of A. fumigatus revealed active lignocellulose-degrading genes

Secretome diversity and quantitative analysis of cellulolytic Aspergillus fumigatus Z5 in the presence of different carbon sources

(2013) Dongyang Liu et al.   Biotechnology for Biofuels

Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi

(2013) Zhongtao Zhao et al.   BMC GENOMICS

Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger

(2013) Laure Ries et al.   BMC GENOMICS

A versatile toolkit for high throughput functional genomics with Trichoderma reesei

(2012) Andre Schuster et al.   Biotechnology for Biofuels

Characterization of a thermostable β-glucosidase from Aspergillus fumigatus Z5, and its functional expression in Pichia pastoris X33

(2012) Dongyang Liu et al.   Microbial Cell Factories

Induction of lignocellulose-degrading enzymes in Neurospora crassa by cellodextrins

(2012) E. A. Znameroski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Uncovering the Genome-Wide Transcriptional Responses of the Filamentous Fungus Aspergillus niger to Lignocellulose Using RNA Sequencing

(2012) Stéphane Delmas et al.   PLoS Genetics

Cellobiose Dehydrogenase and a Copper-Dependent Polysaccharide Monooxygenase Potentiate Cellulose Degradation byNeurospora crassa

(2011) Christopher M. Phillips et al.   ACS Chemical Biology

Thermostable cellulase production of Aspergillus fumigatus Z5 under solid-state fermentation and its application in degradation of agricultural wastes

(2011) Dongyang Liu et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Promotion of Efficient Saccharification of Crystalline Cellulose by Aspergillus fumigatus Swo1

(2010) X. a. Chen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

D-Xylose as a Repressor or Inducer of Xylanase Expression in Hypocrea jecorina (Trichoderma reesei)

(2010) A. R. Mach-Aigner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Assembly of large genomes using second-generation sequencing

(2010) M. C. Schatz et al.   GENOME RESEARCH

CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database

(2010) Byung H Park et al.   GLYCOBIOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Transcriptomic comparison of Aspergillus niger growing on two different sugars reveals coordinated regulation of the secretory pathway

(2009) Thomas R Jørgensen et al.   BMC GENOMICS

Lignocellulose conversion to biofuels: current challenges, global perspectives

(2009) Michael E Himmel et al.   CURRENT OPINION IN BIOTECHNOLOGY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

The minimal enzyme cocktail concept for biomass processing

(2009) Anne S. Meyer et al.   JOURNAL OF CEREAL SCIENCE

Next-generation DNA sequencing techniques

(2009) Wilhelm J. Ansorge   New Biotechnology

Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa

(2009) Chaoguang Tian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Three Microbial Strategies for Plant Cell Wall Degradation

(2008) David B. Wilson   Annals of the New York Academy of Sciences

Protein glycosylation pathways in filamentous fungi

(2008) Nandan Deshpande et al.   GLYCOBIOLOGY

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

(2008) Diego Martinez et al.   NATURE BIOTECHNOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Plant genetic engineering for biofuel production: towards affordable cellulosic ethanol

(2008) Mariam B. Sticklen   NATURE REVIEWS GENETICS

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

A trispecies Aspergillus microarray: Comparative transcriptomics of three Aspergillus species

(2008) M. R. Andersen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus

(2008) Natalie D. Fedorova et al.   PLoS Genetics