Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger

Differential Involvement of β-Glucosidases from Hypocrea jecorina in Rapid Induction of Cellulase Genes by Cellulose and Cellobiose

(2012) Qingxin Zhou et al.   EUKARYOTIC CELL

Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates

(2012) Mari Häkkinen et al.   Microbial Cell Factories

Uncovering the Genome-Wide Transcriptional Responses of the Filamentous Fungus Aspergillus niger to Lignocellulose Using RNA Sequencing

(2012) Stéphane Delmas et al.   PLoS Genetics

L-Arabitol Is the Actual Inducer of Xylanase Expression in Hypocrea jecorina (Trichoderma reesei)

(2011) Astrid R. Mach-Aigner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fungal enzyme sets for plant polysaccharide degradation

(2011) Joost van den Brink et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The challenge of enzyme cost in the production of lignocellulosic biofuels

(2011) Daniel Klein-Marcuschamer et al.   BIOTECHNOLOGY AND BIOENGINEERING

RNA Interference in Fungi: Pathways, Functions, and Applications

(2011) Yunkun Dang et al.   EUKARYOTIC CELL

Hexose Transporters of a Hemibiotrophic Plant Pathogen

(2011) Ulrike Lingner et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Pretreatment of woody biomass for biofuel production: energy efficiency, technologies, and recalcitrance

(2010) J. Y. Zhu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Stimulation of Lignocellulosic Biomass Hydrolysis by Proteins of Glycoside Hydrolase Family 61: Structure and Function of a Large, Enigmatic Family

(2010) Paul V. Harris et al.   BIOCHEMISTRY

Cellulase Hyperproducing Mutants Derived from the FungusTrichoderma reeseiQM9414 Produced Large Amounts of Cellulase at the Enzymatic and Transcriptional Levels

(2010) Tatsuya FUJII et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Engineered microbial systems for enhanced conversion of lignocellulosic biomass

(2010) James G Elkins et al.   CURRENT OPINION IN BIOTECHNOLOGY

Differential Regulation of the Cellulase Transcription Factors XYR1, ACE2, and ACE1 in Trichoderma reesei Strains Producing High and Low Levels of Cellulase

(2010) Thomas Portnoy et al.   EUKARYOTIC CELL

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays

(2009) Joshua S Bloom et al.   BMC GENOMICS

Ceramidases: regulators of cellular responses mediated by ceramide, sphingosine, and sphingosine-1-phosphate

(2008) C MAO   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

In-depth analysis of the Aspergillus niger glucoamylase (glaA) promoter performance using high-throughput screening and controlled bioreactor cultivation techniques

(2008) M GANZLIN et al.   JOURNAL OF BIOTECHNOLOGY

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

(2008) Diego Martinez et al.   NATURE BIOTECHNOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH