How Much Does Ne Vary Among Species?

Is adaptation limited by mutation? A timescale-dependent effect of genetic diversity on the adaptive substitution rate in animals

(2020) Marjolaine Rousselle et al.   PLoS Genetics

Do estimates of contemporary effective population size tell us what we want to know?

(2019) Nils Ryman et al.   MOLECULAR ECOLOGY

Exploiting selection at linked sites to infer the rate and strength of adaptation

(2019) Lawrence H. Uricchio et al.   Nature Ecology & Evolution

The Impact of Protein Architecture on Adaptive Evolution

(2019) Ana Filipa Moutinho et al.   MOLECULAR BIOLOGY AND EVOLUTION

The determinants of genetic diversity in butterflies

(2019) Alexander Mackintosh et al.   Nature Communications

Inferring the distribution of fitness effects of spontaneous mutations in Chlamydomonas reinhardtii

(2019) Katharina B. Böndel et al.   PLOS BIOLOGY

Comparison of the Full Distribution of Fitness Effects of New Amino Acid Mutations Across Great Apes

(2019) David Castellano et al.   GENETICS

Overestimation of the adaptive substitution rate in fluctuating populations

(2018) Marjolaine Rousselle et al.   Biology Letters

Inferring Fitness Effects from Time-Resolved Sequence Data with a Delay-Deterministic Model

(2018) Nuno R. Nené et al.   GENETICS

Inferring Fitness Effects from Time-Resolved Sequence Data with a Delay-Deterministic Model

(2018) Nuno R. Nené et al.   GENETICS

Biased inference of selection due to GC-biased gene conversion and the rate of protein evolution in flycatchers when accounting for it

(2018) Paulina Bolívar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Extreme Lewontin’s Paradox in Ubiquitous Marine Phytoplankton Species

(2018) Dmitry A Filatov   MOLECULAR BIOLOGY AND EVOLUTION

Influence of recombination and GC-biased gene conversion on the adaptive and non-adaptive substitution rate in mammals vs. birds

(2018) M Rousselle et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inference of Distribution of Fitness Effects and Proportion of Adaptive Substitutions from Polymorphism Data

(2017) Paula Tataru et al.   GENETICS

Inference of the Distribution of Selection Coefficients for New Nonsynonymous Mutations Using Large Samples

(2017) Bernard Y. Kim et al.   GENETICS

Relaxed Selection During a Recent Human Expansion

(2017) Stephan Peischl et al.   GENETICS

OUP accepted manuscript

(2017)   Genome Biology and Evolution

Genetic Diversity and the Efficacy of Purifying Selection across Plant and Animal Species

(2017) Jun Chen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Determining the factors driving selective effects of new nonsynonymous mutations

(2017) Christian D. Huber et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fine scale mapping of genomic introgressions within the Drosophila yakuba clade

(2017) David A. Turissini et al.   PLoS Genetics

Inference of Distribution of Fitness Effects and Proportion of Adaptive Substitutions from Polymorphism Data

(2017) Paula Tataru et al.   GENETICS

Inference of the Distribution of Selection Coefficients for New Nonsynonymous Mutations Using Large Samples

(2017) Bernard Y. Kim et al.   GENETICS

Relaxed Selection During a Recent Human Expansion

(2017) Stephan Peischl et al.   GENETICS

When Is Selection Effective?

(2016) Simon Gravel   GENETICS

Estimating the Effective Population Size from Temporal Allele Frequency Changes in Experimental Evolution

(2016) A. Jonas et al.   GENETICS

Inferring the Frequency Spectrum of Derived Variants to Quantify Adaptive Molecular Evolution in Protein-Coding Genes of Drosophila melanogaster

(2016) Peter D. Keightley et al.   GENETICS

SLiM 2: Flexible, Interactive Forward Genetic Simulations

(2016) Benjamin C. Haller et al.   MOLECULAR BIOLOGY AND EVOLUTION

Life History Traits, Protein Evolution, and the Nearly Neutral Theory in Amniotes

(2016) Emeric Figuet et al.   MOLECULAR BIOLOGY AND EVOLUTION

High-throughput discovery of novel developmental phenotypes

(2016) Mary E. Dickinson et al.   NATURE

Determinants of genetic diversity

(2016) Hans Ellegren et al.   NATURE REVIEWS GENETICS

The Limits of Natural Selection in a Nonequilibrium World

(2016) Yaniv Brandvain et al.   TRENDS IN GENETICS

A Genomic Map of the Effects of Linked Selection in Drosophila

(2016) Eyal Elyashiv et al.   PLoS Genetics

Adaptive Protein Evolution in Animals and the Effective Population Size Hypothesis

(2016) Nicolas Galtier   PLoS Genetics

When Is Selection Effective?

(2016) Simon Gravel   GENETICS

Inferring the Frequency Spectrum of Derived Variants to Quantify Adaptive Molecular Evolution in Protein-Coding Genes of Drosophila melanogaster

(2016) Peter D. Keightley et al.   GENETICS

Natural Selection Constrains Neutral Diversity across A Wide Range of Species

(2015) Russell B. Corbett-Detig et al.   PLOS BIOLOGY

Comparative population genomics in animals uncovers the determinants of genetic diversity

(2014) J. Romiguier et al.   NATURE

Genetic Diversity in the Interference Selection Limit

(2014) Benjamin H. Good et al.   PLoS Genetics

Loss and Recovery of Genetic Diversity in Adapting Populations of HIV

(2014) Pleuni S. Pennings et al.   PLoS Genetics

Frequent adaptation and the McDonald-Kreitman test

(2013) P. W. Messer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reference-Free Population Genomics from Next-Generation Transcriptome Data and the Vertebrate–Invertebrate Gap

(2013) Philippe Gayral et al.   PLoS Genetics

Dynamics of Neutral and Selected Alleles When the Offspring Distribution Is Skewed

(2012) R. Der et al.   GENETICS

Patterns of Neutral Diversity Under General Models of Selective Sweeps

(2012) G. Coop et al.   GENETICS

Rate of de novo mutations and the importance of father’s age to disease risk

(2012) Augustine Kong et al.   NATURE

Drift-barrier hypothesis and mutation-rate evolution

(2012) W. Sung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Revisiting an Old Riddle: What Determines Genetic Diversity Levels within Species?

(2012) Ellen M. Leffler et al.   PLOS BIOLOGY

The Repatterning of Eukaryotic Genomes by Random Genetic Drift

(2011) Michael Lynch et al.   Annual Review of Genomics and Human Genetics

RECOMBINATION AND HITCHHIKING OF DELETERIOUS ALLELES

(2011) Matthew Hartfield et al.   EVOLUTION

A Method for Inferring the Rate of Occurrence and Fitness Effects of Advantageous Mutations

(2011) Adrian Schneider et al.   GENETICS

Characterizing the Influence of Effective Population Size on the Rate of Adaptation: Gillespie’s Darwin Domain

(2011) Jeffrey D. Jensen et al.   Genome Biology and Evolution

Shifts in the intensity of purifying selection: An analysis of genome-wide polymorphism data from two closely related yeast species

(2010) E. Elyashiv et al.   GENOME RESEARCH

Genetic linkage and natural selection

(2010) N. H. Barton   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evidence that Adaptation in Drosophila Is Not Limited by Mutation at Single Sites

(2010) Talia Karasov et al.   PLoS Genetics

Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines

(2009) P. D. Keightley et al.   GENOME RESEARCH

Estimating the Rate of Adaptive Molecular Evolution in the Presence of Slightly Deleterious Mutations and Population Size Change

(2009) A. Eyre-Walker et al.   MOLECULAR BIOLOGY AND EVOLUTION

Divergence and Polymorphism Under the Nearly Neutral Theory of Molecular Evolution

(2008) John J. Welch et al.   JOURNAL OF MOLECULAR EVOLUTION

The effects of deleterious mutations on evolution in non-recombining genomes

(2008) Vera B. Kaiser et al.   TRENDS IN GENETICS

Assessing the Evolutionary Impact of Amino Acid Mutations in the Human Genome

(2008) Adam R. Boyko et al.   PLoS Genetics