Escherichia coli O157:H7 strains harbor at least three distinct sequence types of Shiga toxin 2a-converting phages
出版年份 2015 全文链接
标题
Escherichia coli O157:H7 strains harbor at least three distinct sequence types of Shiga toxin 2a-converting phages
作者
关键词
<em class=EmphasisTypeItalic >Escherichia coli</em> O157:H7, Shiga toxin, Bacteriophage, Genomics
出版物
BMC GENOMICS
Volume 16, Issue 1, Pages -
出版商
Springer Nature
发表日期
2015-09-29
DOI
10.1186/s12864-015-1934-1
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Coculture of Escherichia coli O157:H7 with a Nonpathogenic E. coli Strain Increases Toxin Production and Virulence in a Germfree Mouse Model
- (2015) Kakolie Goswami et al. INFECTION AND IMMUNITY
- Bacteriophage lambda: Early pioneer and still relevant
- (2015) Sherwood R. Casjens et al. VIROLOGY
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Whole genome sequence comparison of vtx2-converting phages from Enteroaggregative Haemorrhagic Escherichia coli strains
- (2014) Laura Grande et al. BMC GENOMICS
- Phylogenetic characterization of Escherichia coli O157 : H7 based on IS629 distribution and Shiga toxin genotype
- (2014) E. Stanton et al. MICROBIOLOGY-SGM
- Phylogenetic Clades 6 and 8 of Enterohemorrhagic Escherichia coli O157:H7 With Particular stx Subtypes are More Frequently Found in Isolates From Hemolytic Uremic Syndrome Patients Than From Asymptomatic Carriers
- (2014) S. Iyoda et al. Open Forum Infectious Diseases
- Identification and Characterization of Spontaneous Deletions within the Sp11-Sp12 Prophage Region of Escherichia coli O157:H7 Sakai
- (2013) Chun Chen et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
- (2013) Ross Overbeek et al. NUCLEIC ACIDS RESEARCH
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Correction: Macrophage Migration Inhibitory Factor Inhibits the Migration of Cartilage End Plate-Derived Stem Cells by Reacting with CD74
- (2013) Cheng-jie Xiong et al. PLoS One
- Evolution of the Stx2-Encoding Prophage in Persistent Bovine Escherichia coli O157:H7 Strains
- (2012) Dongjin Park et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- Comparative genomics of Shiga toxin encoding bacteriophages
- (2012) Darren L Smith et al. BMC GENOMICS
- Multicenter Evaluation of a Sequence-Based Protocol for Subtyping Shiga Toxins and Standardizing Stx Nomenclature
- (2012) F. Scheutz et al. JOURNAL OF CLINICAL MICROBIOLOGY
- EvolView, an online tool for visualizing, annotating and managing phylogenetic trees
- (2012) Huangkai Zhang et al. NUCLEIC ACIDS RESEARCH
- A Comparison of Shiga-Toxin 2 Bacteriophage from Classical Enterohemorrhagic Escherichia coli Serotypes and the German E. coli O104:H4 Outbreak Strain
- (2012) Chad R. Laing et al. PLoS One
- Comparative Genomics and stx Phage Characterization of LEE-Negative Shiga Toxin-Producing Escherichia coli
- (2012) Susan R. Steyert et al. Frontiers in Cellular and Infection Microbiology
- Enterohemorrhagic E. coli (EHEC) pathogenesis
- (2012) Y Nguyen et al. Frontiers in Cellular and Infection Microbiology
- Genome Signatures of Escherichia coli O157:H7 Isolates from the Bovine Host Reservoir
- (2011) Mark Eppinger et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Genome sequence analyses of two isolates from the recent Escherichia coli outbreak in Germany reveal the emergence of a new pathotype: Entero-Aggregative-Haemorrhagic Escherichia coli (EAHEC)
- (2011) Elzbieta Brzuszkiewicz et al. ARCHIVES OF MICROBIOLOGY
- Easyfig: a genome comparison visualizer
- (2011) M. J. Sullivan et al. BIOINFORMATICS
- Escherichia coli O157:H7 of Genotype Lineage-Specific Polymorphism Assay 211111 and Clade 8 Are Common Clinical Isolates Within Pennsylvania
- (2011) Annette Hartzell et al. Foodborne Pathogens and Disease
- Shiga toxin 2 overexpression in Escherichia coli O157:H7 strains associated with severe human disease
- (2011) Mahesh Neupane et al. MICROBIAL PATHOGENESIS
- PHAST: A Fast Phage Search Tool
- (2011) Y. Zhou et al. NUCLEIC ACIDS RESEARCH
- Genomic anatomy of Escherichia coli O157:H7 outbreaks
- (2011) M. Eppinger et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mugsy: fast multiple alignment of closely related whole genomes
- (2010) Samuel V. Angiuoli et al. BIOINFORMATICS
- PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
- (2010) Nancy Y. Yu et al. BIOINFORMATICS
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions
- (2010) Chad Laing et al. BMC BIOINFORMATICS
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Further evidence of constrained radiation in the evolution of pathogenic Escherichia coli O157:H7
- (2010) Shana R. Leopold et al. INFECTION GENETICS AND EVOLUTION
- Biased distribution of IS629 among strains in different lineages of enterohemorrhagic Escherichia coli serovar O157
- (2010) Eiji Yokoyama et al. INFECTION GENETICS AND EVOLUTION
- progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
- (2010) Aaron E. Darling et al. PLoS One
- Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
- (2010) Jeremy Goecks et al. GENOME BIOLOGY
- Lineage and Host Source Are Both Correlated with Levels of Shiga Toxin 2 Production by Escherichia coli O157:H7 Strains
- (2009) Y. Zhang et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Inference of the impact of insertion sequence (IS) elements on bacterial genome diversification through analysis of small-size structural polymorphisms in Escherichia coli O157 genomes
- (2009) T. Ooka et al. GENOME RESEARCH
- A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis
- (2009) S. R. Leopold et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli
- (2009) Y. Ogura et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Defective Prophage Pool of Escherichia coli O157: Prophage–Prophage Interactions Potentiate Horizontal Transfer of Virulence Determinants
- (2009) Md Asadulghani et al. PLoS Pathogens
- Genotypic Characterization and Prevalence of Virulence Factors among Canadian Escherichia coli O157:H7 Strains
- (2008) K. Ziebell et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The CI Repressors of Shiga Toxin-Converting Prophages Are Involved in Coinfection of Escherichia coli Strains, Which Causes a Down Regulation in the Production of Shiga Toxin 2
- (2008) R. Serra-Moreno et al. JOURNAL OF BACTERIOLOGY
- NCBI BLAST: a better web interface
- (2008) M. Johnson et al. NUCLEIC ACIDS RESEARCH
- Variation in virulence among clades of Escherichia coli O157:H7 associated with disease outbreaks
- (2008) S. D. Manning et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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