Transcriptome profiling of the dynamic life cycle of the scypohozoan jellyfish Aurelia aurita

Differential gene expression between functionally specialized polyps of the colonial hydrozoan Hydractinia symbiolongicarpus (Phylum Cnidaria)

(2014) Steven M Sanders et al.   BMC GENOMICS

Regulation of Polyp-to-Jellyfish Transition in Aurelia aurita

(2014) Björn Fuchs et al.   CURRENT BIOLOGY

Lineage-specific evolution of cnidarian Wnt ligands

(2014) Katrin Hensel et al.   EVOLUTION & DEVELOPMENT

Krüppel-like factors are effectors of nuclear receptor signaling

(2014) Joseph R. Knoedler et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Molecular Characterisation, Evolution and Expression of Hypoxia-Inducible Factor in Aurelia sp.1

(2014) Guoshan Wang et al.   PLoS One

Molecular insights into the origin of the Hox-TALE patterning system

(2014) Bruno Hudry et al.   eLife

Ancient origin of somatic and visceral neurons

(2013) Marc Nomaksteinsky et al.   BMC BIOLOGY

KEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database of a coral genome

(2013) Walter C Dunlap et al.   BMC GENOMICS

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

The role of Atonal transcription factors in the development of mechanosensitive cells

(2013) Andrew P. Jarman et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Roles of cilia, fluid flow, and Ca2+ signaling in breaking of left–right symmetry

(2013) Satoko Yoshiba et al.   TRENDS IN GENETICS

Micro- and Macrorheology of Jellyfish Extracellular Matrix

(2012) Camille Gambini et al.   BIOPHYSICAL JOURNAL

Indomethacin Induction of Metamorphosis from the Asexual Stage to Sexual Stage in the Moon Jellyfish,Aurelia aurita

(2012) Hisato KUNIYOSHI et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Components, structure, biogenesis and function of the Hydra extracellular matrix in regeneration, pattern formation and cell differentiation

(2012) Michael P. Sarras (Jr)   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

The evolution of metazoan extracellular matrix

(2012) Richard O. Hynes   JOURNAL OF CELL BIOLOGY

Environmental evidence that seasonal hypoxia enhances survival and success of jellyfish polyps in the northern Gulf of Mexico

(2012) Mary-Elizabeth C. Miller et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Towards a molecular architecture of centriole assembly

(2012) Pierre Gönczy   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Evolutionarily Ancient Association of the FoxJ1 Transcription Factor with the Motile Ciliogenic Program

(2012) Shubha Vij et al.   PLoS Genetics

Molecular Evolution of the Metazoan PHD–HIF Oxygen-Sensing System

(2011) Kalle T. Rytkönen et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Estimation of divergence times in cnidarian evolution based on mitochondrial protein-coding genes and the fossil record

(2011) Eunji Park et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Next-generation transcriptome assembly

(2011) Jeffrey A. Martin et al.   NATURE REVIEWS GENETICS

Jellyfish blooms result in a major microbial respiratory sink of carbon in marine systems

(2011) R. H. Condon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The role of bHLH genes in ear development and evolution: revisiting a 10-year-old hypothesis

(2010) Bernd Fritzsch et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Evolutionary origin of rhopalia: insights from cellular-level analyses of Otx and POU expression patterns in the developing rhopalial nervous system

(2010) Nagayasu Nakanishi et al.   EVOLUTION & DEVELOPMENT

Seasonal and vertical distribution of Aurelia aurita polyps on a pylon in the innermost part of Tokyo Bay

(2010) Haruto Ishii et al.   JOURNAL OF OCEANOGRAPHY

Contribution to the understanding of seasonal cycle of Aurelia aurita (Cnidaria: Scyphozoa) scyphopolyps in the northern Adriatic Sea

(2010) Cristina Gioia Di Camillo et al.   JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM

Environmental Control of Phase Transition and Polyp Survival of a Massive-Outbreaker Jellyfish

(2010) Laura Prieto et al.   PLoS One

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Wnt Signaling and the Polarity of the Primary Body Axis

(2009) Christian P. Petersen et al.   CELL

Early evolution of metazoan transcription factors

(2009) Bernard M Degnan et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Development of the rhopalial nervous system in Aurelia sp.1 (Cnidaria, Scyphozoa)

(2009) Nagayasu Nakanishi et al.   DEVELOPMENT GENES AND EVOLUTION

A census of human transcription factors: function, expression and evolution

(2009) Juan M. Vaquerizas et al.   NATURE REVIEWS GENETICS

Are Hox Genes Ancestrally Involved in Axial Patterning? Evidence from the Hydrozoan Clytia hemisphaerica (Cnidaria)

(2009) Roxane Chiori et al.   PLoS One

The jellyfish joyride: causes, consequences and management responses to a more gelatinous future

(2009) Anthony J. Richardson et al.   TRENDS IN ECOLOGY & EVOLUTION

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Embryonic development and metamorphosis of the scyphozoan Aurelia

(2008) David Yuan et al.   DEVELOPMENT GENES AND EVOLUTION

Interannual variation of strobilation by the scyphozoan Aurelia labiata in relation to polyp density, temperature, salinity, and light conditions in situ

(2008) JE Purcell et al.   MARINE ECOLOGY PROGRESS SERIES

Foxj1 transcription factors are master regulators of the motile ciliogenic program

(2008) Xianwen Yu et al.   NATURE GENETICS

The forkhead protein Foxj1 specifies node-like cilia in Xenopus and zebrafish embryos

(2008) Jennifer L Stubbs et al.   NATURE GENETICS