Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model
出版年份 2015 全文链接
标题
Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model
作者
关键词
DNA methylation, Pigs, RNA-seq, Biomedical research, Adaptive evolution
出版物
BMC GENOMICS
Volume 16, Issue 1, Pages -
出版商
Springer Nature
发表日期
2015-10-05
DOI
10.1186/s12864-015-1938-x
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Swine in Biomedical Research 2014
- (2015) Randall S. Prather et al. LAB ANIMAL
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- A Genetic Porcine Model of Cancer
- (2015) Lawrence B. Schook et al. PLoS One
- Unraveling the Swine Genome: Implications for Human Health
- (2015) Lawrence B. Schook et al. Annual Review of Animal Biosciences
- Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project
- (2015) Leif Andersson et al. GENOME BIOLOGY
- Whole-genome sequence analysis reveals differences in population management and selection of European low-input pig breeds
- (2014) Juan Herrero-Medrano et al. BMC GENOMICS
- Marked methylation changes in intestinal genes during the perinatal period of preterm neonates
- (2014) Fei Gao et al. BMC GENOMICS
- MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
- (2014) Wan-Ping Lee et al. PLoS One
- Allelic Expression of Deleterious Protein-Coding Variants across Human Tissues
- (2014) Kimberly R. Kukurba et al. PLoS Genetics
- NGSUtils: a software suite for analyzing and manipulating next-generation sequencing datasets
- (2013) Marcus R. Breese et al. BIOINFORMATICS
- Locus-Specific DNA Methylation Reprogramming During Early Porcine Embryogenesis1
- (2013) Ming-Tao Zhao et al. BIOLOGY OF REPRODUCTION
- BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data
- (2013) Weilong Guo et al. BMC GENOMICS
- Dynamic DNA methylation across diverse human cell lines and tissues
- (2013) K. E. Varley et al. GENOME RESEARCH
- DNA-methylation effect on cotranscriptional splicing is dependent on GC architecture of the exon-intron structure
- (2013) S. Gelfman et al. GENOME RESEARCH
- Artificial Selection on Brain-Expressed Genes during the Domestication of Dog
- (2013) Yan Li et al. MOLECULAR BIOLOGY AND EVOLUTION
- Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain
- (2013) Junjie U Guo et al. NATURE NEUROSCIENCE
- Global Epigenomic Reconfiguration During Mammalian Brain Development
- (2013) R. Lister et al. SCIENCE
- Mouse Oocyte Methylomes at Base Resolution Reveal Genome-Wide Accumulation of Non-CpG Methylation and Role of DNA Methyltransferases
- (2013) Kenjiro Shirane et al. PLoS Genetics
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- DNA methylation profiling in breast cancer discordant identical twins identifies DOK7 as novel epigenetic biomarker
- (2012) H. Heyn et al. CARCINOGENESIS
- Genome-Wide DNA Methylation Changes between the Superficial and Deep Backfat Tissues of the Pig
- (2012) Mingzhou Li et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- ENCODE: The human encyclopaedia
- (2012) Brendan Maher NATURE
- Analyses of pig genomes provide insight into porcine demography and evolution
- (2012) Martien A. M. Groenen et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Functions of DNA methylation: islands, start sites, gene bodies and beyond
- (2012) Peter A. Jones NATURE REVIEWS GENETICS
- Mammalian cells acquire epigenetic hallmarks of human cancer during immortalization
- (2012) Stella Tommasi et al. NUCLEIC ACIDS RESEARCH
- Quantitative Sequencing of 5-Methylcytosine and 5-Hydroxymethylcytosine at Single-Base Resolution
- (2012) M. J. Booth et al. SCIENCE
- An atlas of DNA methylomes in porcine adipose and muscle tissues
- (2012) Mingzhou Li et al. Nature Communications
- Regions of Homozygosity in the Porcine Genome: Consequence of Demography and the Recombination Landscape
- (2012) Mirte Bosse et al. PLoS Genetics
- Changes of DNA Methylation Level and Spatial Arrangement of Primordial Germ Cells in Embryonic Day 15 to Embryonic Day 28 Pig Embryos1
- (2011) Sara Maj Watjen Hyldig et al. BIOLOGY OF REPRODUCTION
- Integrative genome-wide expression and promoter DNA methylation profiling identifies a potential novel panel of ovarian cancer epigenetic biomarkers
- (2011) Brian S. Gloss et al. CANCER LETTERS
- DNA methylation profiling reveals novel biomarkers and important roles for DNA methyltransferases in prostate cancer
- (2011) Y. Kobayashi et al. GENOME RESEARCH
- Genome-scale analysis of aberrant DNA methylation in colorectal cancer
- (2011) T. Hinoue et al. GENOME RESEARCH
- Genome-wide Regulation of 5hmC, 5mC, and Gene Expression by Tet1 Hydroxylase in Mouse Embryonic Stem Cells
- (2011) Yufei Xu et al. MOLECULAR CELL
- Genetic modifications of pigs for medicine and agriculture
- (2011) Jeffrey J. Whyte et al. MOLECULAR REPRODUCTION AND DEVELOPMENT
- CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing
- (2011) Sanjeev Shukla et al. NATURE
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- CpG Islands Undermethylation in Human Genomic Regions under Selective Pressure
- (2011) Sergio Cocozza et al. PLoS One
- Global DNA Demethylation During Mouse Erythropoiesis in Vivo
- (2011) J. R. Shearstone et al. SCIENCE
- The pig: a model for human infectious diseases
- (2011) François Meurens et al. TRENDS IN MICROBIOLOGY
- DNA methylation biomarkers for lung cancer
- (2011) Tibor A. Rauch et al. TUMOR BIOLOGY
- Genomic Distribution and Inter-Sample Variation of Non-CpG Methylation across Human Cell Types
- (2011) Michael J. Ziller et al. PLoS Genetics
- Glucose Intolerance and Reduced Proliferation of Pancreatic -Cells in Transgenic Pigs With Impaired Glucose-Dependent Insulinotropic Polypeptide Function
- (2010) S. Renner et al. DIABETES
- Comparative analysis of DNA methylation profiles in peripheral blood leukocytes versus lymphoblastoid cell lines
- (2010) Eoin P. Brennan et al. Epigenetics
- Cell culture-induced aberrant methylation of the imprinted IG DMR in human lymphoblastoid cell lines
- (2010) Aabida Saferali et al. Epigenetics
- Dynamic changes in the human methylome during differentiation
- (2010) L. Laurent et al. GENOME RESEARCH
- Placentation in the pig visualized by eGFP fluorescence in eNOS over-expressing cloned transgenic swine
- (2010) Jeffrey Whyte et al. MOLECULAR REPRODUCTION AND DEVELOPMENT
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- X chromosome-wide analyses of genomic DNA methylation states and gene expression in male and female neutrophils
- (2010) Yukio Yasukochi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- EBV transformation and cell culturing destabilizes DNA methylation in human lymphoblastoid cell lines
- (2009) D. Grafodatskaya et al. GENOMICS
- Human DNA methylomes at base resolution show widespread epigenomic differences
- (2009) Ryan Lister et al. NATURE
- Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells
- (2009) Madeleine P Ball et al. NATURE BIOTECHNOLOGY
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
- Hemizygous minipigs produced by random gene insertion and handmade cloning express the Alzheimer’s disease-causing dominant mutation APPsw
- (2009) Peter M. Kragh et al. TRANSGENIC RESEARCH
- Dominant-negative mutant hepatocyte nuclear factor 1α induces diabetes in transgenic-cloned pigs
- (2009) Kazuhiro Umeyama et al. TRANSGENIC RESEARCH
- Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution
- (2008) Sean B. Carroll CELL
- Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation
- (2008) Luis López-Maury et al. NATURE REVIEWS GENETICS
- DNA methylation landscapes: provocative insights from epigenomics
- (2008) Miho M. Suzuki et al. NATURE REVIEWS GENETICS
- Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
- (2008) Da Wei Huang et al. NUCLEIC ACIDS RESEARCH
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now