Integrated transcriptome catalogue and organ-specific profiling of gene expression in fertile garlic (Allium sativum L.)

Fuelling genetic and metabolic exploration of C3bioenergy crops through the first reference transcriptome ofArundo donaxL.

(2014) Gaurav Sablok et al.   PLANT BIOTECHNOLOGY JOURNAL

Single-Nucleotide Polymorphism Markers from De-Novo Assembly of the Pomegranate Transcriptome Reveal Germplasm Genetic Diversity

(2014) Ron Ophir et al.   PLoS One

Turned on by heat: differential expression of FT and LFY-like genes in Narcissus tazetta during floral transition

(2013) Tal Noy-Porat et al.   JOURNAL OF EXPERIMENTAL BOTANY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Transcriptome sequencing to produce SNP-based genetic maps of onion

(2013) J. Duangjit et al.   THEORETICAL AND APPLIED GENETICS

Generation and analysis of expressed sequence tags in the extreme large genomes Lilium and Tulipa

(2012) Arwa Shahin et al.   BMC GENOMICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Genotypic variation in sulfur assimilation and metabolism of onion (Allium cepa L.) III. Characterization of sulfite reductase

(2012) Michael T. McManus et al.   PHYTOCHEMISTRY

De novo assembly and characterization of the garlic (Allium sativum) bud transcriptome by Illumina sequencing

(2012) Xiudong Sun et al.   PLANT CELL REPORTS

Male gametogenesis and sterility in garlic (Allium sativum L.): barriers on the way to fertilization and seed production

(2012) Einat Shemesh Mayer et al.   PLANTA

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Transcriptome analysis of tree peony during chilling requirement fulfillment: Assembling, annotation and markers discovering

(2011) Shupeng Gai et al.   GENE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

De Novo Assembly of Expressed Transcripts and Global Analysis of the Phalaenopsis aphrodite Transcriptome

(2011) Chun-lin Su et al.   PLANT AND CELL PHYSIOLOGY

Flower development in garlic: the ups and downs of gaLFY expression

(2011) Rotem Neta et al.   PLANTA

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Genome-scale analysis and comparison of gene expression profiles in developing and germinated pollen in Oryza sativa

(2010) Li Q Wei et al.   BMC GENOMICS

From the model to the crop: genes controlling tuber formation in potato

(2010) José A Abelenda et al.   CURRENT OPINION IN BIOTECHNOLOGY

Similarities in the circadian clock and photoperiodism in plants

(2010) Young Hun Song et al.   CURRENT OPINION IN PLANT BIOLOGY

Regulation of flowering in rice: two florigen genes, a complex gene network, and natural variation

(2010) Hiroyuki Tsuji et al.   CURRENT OPINION IN PLANT BIOLOGY

A Two-step Process Controls the Formation of the Bienzyme Cysteine Synthase Complex

(2010) Enea Salsi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Rice Expression Atlas In Reproductive Development

(2010) Masahiro Fujita et al.   PLANT AND CELL PHYSIOLOGY

Conservation of Arabidopsis thaliana Photoperiodic Flowering Time Genes in Onion (Allium cepa L.)

(2010) Andrew Taylor et al.   PLANT AND CELL PHYSIOLOGY

RNA-Seq gene expression estimation with read mapping uncertainty

(2009) Bo Li et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

A dynamic gene expression atlas covering the entire life cycle of rice

(2009) Lei Wang et al.   PLANT JOURNAL

The flowering hormone florigen functions as a general systemic regulator of growth and termination

(2009) A. Shalit et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Angiosperm diversification through time

(2008) Susana Magallón et al.   AMERICAN JOURNAL OF BOTANY

The rules of gene expression in plants: Organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana

(2008) Felipe F Aceituno et al.   BMC GENOMICS

Unlocking variability: inherent variation and developmental traits of garlic plants originated from sexual reproduction

(2008) Einat Shemesh et al.   PLANTA