Genomic analyses of a livestock pest, the New World screwworm, find potential targets for genetic control programs

RepeatModeler2 for automated genomic discovery of transposable element families

(2020) Jullien M. Flynn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)

(2019) Uku Raudvere et al.   NUCLEIC ACIDS RESEARCH

Specific Gene Disruption in the Major Livestock Pests Cochliomyia hominivorax and Lucilia cuprina Using CRISPR/Cas9

(2019) Daniel F. Paulo et al.   G3-Genes Genomes Genetics

Improved transgenic sexing strains for genetic control of the Australian sheep blow fly Lucilia cuprina using embryo-specific gene promoters

(2019) Ying Yan et al.   MOLECULAR GENETICS AND GENOMICS

Calcitonin receptors are ancient modulators for rhythms of preferential temperature in insects and body temperature in mammals

(2018) Tadahiro Goda et al.   GENES & DEVELOPMENT

Screwworm (Diptera: Calliphoridae) in the United States: Response to and Elimination of the 2016–2017 Outbreak in Florida

(2018) Steven R Skoda et al.   JOURNAL OF MEDICAL ENTOMOLOGY

A CRISPR–Cas9 gene drive targeting doublesex causes complete population suppression in caged Anopheles gambiae mosquitoes

(2018) Kyros Kyrou et al.   NATURE BIOTECHNOLOGY

FlyBase 2.0: the next generation

(2018) Jim Thurmond et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

Threshold temperatures and thermal requirements of black soldier fly Hermetia illucens: Implications for mass production

(2018) Shaphan Yong Chia et al.   PLoS One

Review of research advances in the screwworm eradication program over the past 25 years

(2017) Maxwell J. Scott et al.   ENTOMOLOGIA EXPERIMENTALIS ET APPLICATA

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

A Chromosome-Scale Assembly of the Bactrocera cucurbitae Genome Provides Insight to the Genetic Basis of White Pupae

(2017) Sheina B. Sim et al.   G3-Genes Genomes Genetics

A transgenic male-only strain of the New World screwworm for an improved control program using the sterile insect technique

(2016) Carolina Concha et al.   BMC BIOLOGY

The making of a pest: Insights from the evolution of chemosensory receptor families in a pestiferous and invasive fly, Drosophila suzukii

(2016) Paul V. Hickner et al.   BMC GENOMICS

Fruitless Represses robo1 Transcription to Shape Male-Specific Neural Morphology and Behavior in Drosophila

(2016) Hiroki Ito et al.   CURRENT BIOLOGY

The Spermatophore in Glossina morsitans morsitans: Insights into Male Contributions to Reproduction

(2016) Francesca Scolari et al.   Scientific Reports

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS: Table 1.

(2015) Katharina J. Hoff et al.   BIOINFORMATICS

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

C2H2 zinc finger proteins greatly expand the human regulatory lexicon

(2015) Hamed S Najafabadi et al.   NATURE BIOTECHNOLOGY

A CRISPR-Cas9 gene drive system targeting female reproduction in the malaria mosquito vector Anopheles gambiae

(2015) Andrew Hammond et al.   NATURE BIOTECHNOLOGY

Dosage Compensation of X-Linked Muller Element F Genes but Not X-Linked Transgenes in the Australian Sheep Blowfly

(2015) Rebecca J. Linger et al.   PLoS One

Highly efficient Cas9-mediated gene drive for population modification of the malaria vector mosquitoAnopheles stephensi

(2015) Valentino M. Gantz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Volatiles Emitted From Eight Wound-Isolated Bacteria Differentially Attract Gravid Screwworms (Diptera: Calliphoridae) to Oviposit

(2015) M. F. Chaudhury et al.   JOURNAL OF MEDICAL ENTOMOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Development and evaluation of male-only strains of the Australian sheep blowfly, Lucilia cuprina

(2014) Maxwell J Scott   BMC GENETICS

Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity

(2014) Matthew T. Weirauch et al.   CELL

Volatiles From Waste Larval Rearing Media Attract Gravid Screwworm Flies (Diptera: Calliphoridae) to Oviposit

(2014) M. F. Chaudhury et al.   JOURNAL OF MEDICAL ENTOMOLOGY

Orthology Inference in Nonmodel Organisms Using Transcriptomes and Low-Coverage Genomes: Improving Accuracy and Matrix Occupancy for Phylogenomics

(2014) Ya Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Diversity and dynamics of the Drosophila transcriptome

(2014) James B. Brown et al.   NATURE

The GOA database: Gene Ontology annotation updates for 2015

(2014) Rachael P. Huntley et al.   NUCLEIC ACIDS RESEARCH

Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm

(2014) Alexandre Lomsadze et al.   NUCLEIC ACIDS RESEARCH

Concerning RNA-guided gene drives for the alteration of wild populations

(2014) Kevin M Esvelt et al.   eLife

Genetic Control of Mosquitoes

(2013) Luke Alphey   Annual Review of Entomology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Conservation and Sex-Specific Splicing of the transformer Gene in the Calliphorids Cochliomyia hominivorax, Cochliomyia macellaria and Lucilia sericata

(2013) Fang Li et al.   PLoS One

Genetic Control of Courtship Behavior in the Housefly: Evidence for a Conserved Bifurcation of the Sex-Determining Pathway

(2013) Nicole Meier et al.   PLoS One

Sex Determination Mechanisms in the Calliphoridae (Blow Flies)

(2013) M.J. Scott et al.   Sexual Development

Proteus mirabilis interkingdom swarming signals attract blow flies

(2012) Qun Ma et al.   ISME Journal

Genome Sizes of Forensically Relevant Diptera

(2012) C. J. Picard et al.   JOURNAL OF MEDICAL ENTOMOLOGY

Elba, a novel developmentally regulated chromatin boundary factor is a hetero-tripartite DNA binding complex

(2012) Tsutomu Aoki et al.   eLife

An Overview of the Components of AW-IPM Campaigns against the New World Screwworm

(2012) Thiago Mastrangelo et al.   Insects

Genomic Determinants of Protein Evolution and Polymorphism in Arabidopsis

(2011) Tanja Slotte et al.   Genome Biology and Evolution

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Episodic radiations in the fly tree of life

(2011) B. M. Wiegmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Crooked, Coiled and Crimpled are three Ly6-like proteins required for proper localization of septate junction components

(2010) A. Nilton et al.   DEVELOPMENT

Conservation and sex-specific splicing of the doublesex gene in the economically important pest species Lucilia cuprina

(2010) Carolina Concha et al.   JOURNAL OF GENETICS

The developmental transcriptome of Drosophila melanogaster

(2010) Brenton R. Graveley et al.   NATURE

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

(2010) Federico Abascal et al.   NUCLEIC ACIDS RESEARCH

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

(2008) Mario Stanke et al.   BIOINFORMATICS

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS