Cooperation between passive and active silicon transporters clarifies the ecophysiology and evolution of biosilicification in sponges

Sponge skeletons as an important sink of silicon in the global oceans

(2019) Manuel Maldonado et al.   Nature Geoscience

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Silicon consumption kinetics by marine sponges: An assessment of their role at the ecosystem level

(2018) María López-Acosta et al.   LIMNOLOGY AND OCEANOGRAPHY

Silicon utilization by sponges: an assessment of seasonal changes

(2018) M López-Acosta et al.   MARINE ECOLOGY PROGRESS SERIES

Predicted distribution of the glass sponge Vazella pourtalesi on the Scotian Shelf and its persistence in the face of climatic variability

(2018) Lindsay Beazley et al.   PLoS One

A silicon depleted North Atlantic since the Palaeogene: Evidence from sponge and radiolarian silicon isotopes

(2016) Guillaume Fontorbe et al.   EARTH AND PLANETARY SCIENCE LETTERS

The evolution of silicon transporters in diatoms

(2016) Colleen A. Durkin et al.   JOURNAL OF PHYCOLOGY

Silicon consumption in two shallow-water sponges with contrasting biological features

(2016) María López-Acosta et al.   LIMNOLOGY AND OCEANOGRAPHY

The Evolution of Silicon Transport in Eukaryotes

(2016) Alan O. Marron et al.   MOLECULAR BIOLOGY AND EVOLUTION

A role for diatom-like silicon transporters in calcifying coccolithophores

(2016) Grażyna M. Durak et al.   Nature Communications

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Aquaporins Mediate Silicon Transport in Humans

(2015) Alexandre P. Garneau et al.   PLoS One

Glassin, a histidine-rich protein from the siliceous skeletal system of the marine spongeEuplectella, directs silica polycondensation

(2015) Katsuhiko Shimizu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A cooperative system of silicon transport in plants

(2015) Jian Feng Ma et al.   TRENDS IN PLANT SCIENCE

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Bioactive and biodegradable silica biomaterial for bone regeneration

(2014) Shunfeng Wang et al.   BONE

Evidence for a Regulatory Role of Diatom Silicon Transporters in Cellular Silicon Responses

(2014) Roshan P. Shrestha et al.   EUKARYOTIC CELL

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

When growth models are not universal: evidence from marine invertebrates

(2013) A. G. Hirst et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The World Ocean Silica Cycle

(2012) Paul J. Tréguer et al.   Annual Review of Marine Science

Tools for crushing diatoms – opal teeth in copepods feature a rubber-like bearing composed of resilin

(2012) Jan Michels et al.   Scientific Reports

Identification of an animal sucrose transporter

(2011) H. Meyer et al.   JOURNAL OF CELL SCIENCE

No limit? The multiphasic uptake of silicic acid by benthic diatoms

(2011) Aude Leynaert et al.   LIMNOLOGY AND OCEANOGRAPHY

Glass sponge reefs as a silicon sink

(2011) JWF Chu et al.   MARINE ECOLOGY PROGRESS SERIES

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Silicon uptake by sponges: a twist to understanding nutrient cycling on continental margins

(2011) Manuel Maldonado et al.   Scientific Reports

Silicon: The key element in early stages of biocalcification

(2010) Nadejda B. Matsko et al.   JOURNAL OF STRUCTURAL BIOLOGY

Revisiting silicon budgets at a tropical continental shelf: Silica standing stocks in sponges surpass those in diatoms

(2010) Manuel Maldonado et al.   LIMNOLOGY AND OCEANOGRAPHY

Occurrence of a Silicatein Gene in Glass Sponges (Hexactinellida: Porifera)

(2010) Galina N. Veremeichik et al.   MARINE BIOTECHNOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Embryonic development of verongid demosponges supports the independent acquisition of spongin skeletons as an alternative to the siliceous skeleton of sponges

(2009) MANUEL MALDONADO   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Silicatein expression in the hexactinellid Crateromorpha meyeri: the lead marker gene restricted to siliceous sponges

(2008) Werner E. G. Müller et al.   CELL AND TISSUE RESEARCH

Identification of a silicatein(-related) protease in the giant spicules of the deep-sea hexactinellid Monorhaphis chuni

(2008) W. E. G. Muller et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Transporters of arsenite in rice and their role in arsenic accumulation in rice grain

(2008) J. F. Ma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Silicon Uptake in Diatoms Revisited: A Model for Saturable and Nonsaturable Uptake Kinetics and the Role of Silicon Transporters

(2007) K. Thamatrakoln et al.   PLANT PHYSIOLOGY

Metalloids: essential, beneficial or toxic? Major intrinsic proteins sort it out

(2007) Gerd P. Bienert et al.   TRENDS IN BIOCHEMICAL SCIENCES