SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat
出版年份 2020 全文链接
标题
SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat
作者
关键词
-
出版物
GigaScience
Volume 9, Issue 6, Pages -
出版商
Oxford University Press (OUP)
发表日期
2020-06-06
DOI
10.1093/gigascience/giaa060
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Sympatric speciation of wild emmer wheat driven by ecology and chromosomal rearrangements
- (2020) Hongwei Wang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat
- (2020) Wenxi Wang et al. GigaScience
- Genomic Analysis Confirms Population Structure and Identifies Inter-Lineage Hybrids in Aegilops tauschii
- (2019) Narinder Singh et al. Frontiers in Plant Science
- Tracing the ancestry of modern bread wheats
- (2019) Caroline Pont et al. NATURE GENETICS
- Exome sequencing highlights the role of wild-relative introgression in shaping the adaptive landscape of the wheat genome
- (2019) Fei He et al. NATURE GENETICS
- Gigwa v2—Extended and improved genotype investigator
- (2019) Guilhem Sempéré et al. GigaScience
- ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
- (2018) Emmanuel Paradis et al. BIOINFORMATICS
- MaizeGDB 2018: the maize multi-genome genetics and genomics database
- (2018) John L Portwood et al. NUCLEIC ACIDS RESEARCH
- Wild emmer genome architecture and diversity elucidate wheat evolution and domestication
- (2017) Raz Avni et al. SCIENCE
- vcfr: a package to manipulate and visualize variant call format data in R
- (2016) Brian J. Knaus et al. Molecular Ecology Resources
- SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation
- (2016) Wei Shen et al. PLoS One
- Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean
- (2015) Zhengkui Zhou et al. NATURE BIOTECHNOLOGY
- SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations
- (2015) Alexis Dereeper et al. NUCLEIC ACIDS RESEARCH
- Information Commons for Rice (IC4R)
- (2015) NUCLEIC ACIDS RESEARCH
- A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes
- (2015) Katherine W Jordan et al. GENOME BIOLOGY
- A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome
- (2015) Jarrod A Chapman et al. GENOME BIOLOGY
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA
- (2014) Emilia Huerta-Sánchez et al. NATURE
- A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
- (2014) et al. SCIENCE
- CanvasDB: a local database infrastructure for analysis of targeted- and whole genome re-sequencing projects
- (2014) A. Ameur et al. Database-The Journal of Biological Databases and Curation
- A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
- (2012) Pablo Cingolani et al. FLY
- Maize HapMap2 identifies extant variation from a genome in flux
- (2012) Jer-Ming Chia et al. NATURE GENETICS
- Tabix: fast retrieval of sequence features from generic TAB-delimited files
- (2011) H. Li BIOINFORMATICS
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- pegas: an R package for population genetics with an integrated-modular approach
- (2010) E. Paradis BIOINFORMATICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationPublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More