A deep learning model to predict RNA-Seq expression of tumours from whole slide images

Predicting survival after hepatocellular carcinoma resection using deep‐learning on histological slides

(2020) Charlie Saillard et al.   HEPATOLOGY

Automated deep-learning system for Gleason grading of prostate cancer using biopsies: a diagnostic study

(2020) Wouter Bulten et al.   LANCET ONCOLOGY

Predicting survival from colorectal cancer histology slides using deep learning: A retrospective multicenter study

(2019) Jakob Nikolas Kather et al.   PLOS MEDICINE

Cell-Type-Specific Gene Expression Profiling in Adult Mouse Brain Reveals Normal and Disease-State Signatures

(2019) Nicolas Merienne et al.   Cell Reports

Virtual histological staining of unlabelled tissue-autofluorescence images via deep learning

(2019) Yair Rivenson et al.   Nature Biomedical Engineering

Deep learning can predict microsatellite instability directly from histology in gastrointestinal cancer

(2019) Jakob Nikolas Kather et al.   NATURE MEDICINE

Targeting the Complement Pathway as a Therapeutic Strategy in Lung Cancer

(2019) Emily K. Kleczko et al.   Frontiers in Immunology

Deep-Learning Convolutional Neural Networks Accurately Classify Genetic Mutations in Gliomas

(2018) P. Chang et al.   AMERICAN JOURNAL OF NEURORADIOLOGY

Quantitative nuclear histomorphometry predicts oncotype DX risk categories for early stage ER+ breast cancer

(2018) Jon Whitney et al.   BMC CANCER

Systematic exploration of cell morphological phenotypes associated with a transcriptomic query

(2018) Isar Nassiri et al.   NUCLEIC ACIDS RESEARCH

Predicting cancer outcomes from histology and genomics using convolutional networks

(2018) Pooya Mobadersany et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomics and emerging biomarkers for immunotherapy of colorectal cancer

(2018) Jakob Nikolas Kather et al.   SEMINARS IN CANCER BIOLOGY

Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images

(2018) Joel Saltz et al.   Cell Reports

Classification and mutation prediction from non–small cell lung cancer histopathology images using deep learning

(2018) Nicolas Coudray et al.   NATURE MEDICINE

A Practical Guide to Whole Slide Imaging: A White Paper From the Digital Pathology Association

(2018) Mark D. Zarella et al.   ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE

First FDA Approval Agnostic of Cancer Site — When a Biomarker Defines the Indication

(2017) Steven Lemery et al.   NEW ENGLAND JOURNAL OF MEDICINE

Mismatch repair deficiency predicts response of solid tumors to PD-1 blockade

(2017) Dung T. Le et al.   SCIENCE

A molecular portrait of microsatellite instability across multiple cancers

(2017) Isidro Cortes-Ciriano et al.   Nature Communications

QuPath: Open source software for digital pathology image analysis

(2017) Peter Bankhead et al.   Scientific Reports

Next-generation sequencing: advances and applications in cancer diagnosis

(2016) Simona Serratì et al.   OncoTargets and Therapy

The prognostic landscape of genes and infiltrating immune cells across human cancers

(2015) Andrew J Gentles et al.   NATURE MEDICINE

TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data

(2015) Antonio Colaprico et al.   NUCLEIC ACIDS RESEARCH

The Tetraspanin CD53 Modulates Responses from Activating NK Cell Receptors, Promoting LFA-1 Activation and Dampening NK Cell Effector Functions

(2014) Izabela Todros-Dawda et al.   PLoS One

Integrated Analysis of Transcriptomic and Proteomic Data

(2013) Saad Haider et al.   CURRENT GENOMICS

CD19 and CD20 Targeted Vectors Induce Minimal Activation of Resting B Lymphocytes

(2013) Sabrina Kneissl et al.   PLoS One

Molecular Link between Liver Fibrosis and Hepatocellular Carcinoma

(2013) Toshiharu Sakurai et al.   Liver Cancer

SLIC Superpixels Compared to State-of-the-Art Superpixel Methods

(2012) R. Achanta et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

Colorectal and Other Cancer Risks for Carriers and Noncarriers From Families With a DNA Mismatch Repair Gene Mutation: A Prospective Cohort Study

(2012) Aung Ko Win et al.   JOURNAL OF CLINICAL ONCOLOGY

Comprehensive molecular characterization of human colon and rectal cancer

(2012)   NATURE

Hallmarks of Cancer: The Next Generation

(2011) Douglas Hanahan et al.   CELL

Genomics and the Continuum of Cancer Care

(2011) Ultan McDermott et al.   NEW ENGLAND JOURNAL OF MEDICINE

Microsatellite Instability in Colorectal Cancer

(2010) C. Richard Boland et al.   GASTROENTEROLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Is there a difference between T- and B-lymphocyte morphology?

(2009) Dmitry I. Strokotov et al.   JOURNAL OF BIOMEDICAL OPTICS

The cancer genome

(2009) Michael R. Stratton et al.   NATURE