Necrotic upper tips1 mimics heat and drought stress and encodes a protoxylem-specific transcription factor in maize

The flowering hormone florigen accelerates secondary cell wall biogenesis to harmonize vascular maturation with reproductive development

(2019) Akiva Shalit-Kaneh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular Mechanisms Driving Switch Behavior in Xylem Cell Differentiation

(2019) Gina M. Turco et al.   Cell Reports

Male Sterility in Maize after Transient Heat Stress during the Tetrad Stage of Pollen Development

(2019) Kevin Begcy et al.   PLANT PHYSIOLOGY

Expression profiles of cell-wall related genes vary broadly between two common maize inbreds during stem development

(2019) Bryan W. Penning et al.   BMC GENOMICS

Continuous root xylem formation and vascular acclimation to water deficit involves endodermal ABA signalling via miR165

(2018) Prashanth Ramachandran et al.   DEVELOPMENT

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

A protocol for combining fluorescent proteins with histological stains for diverse cell wall components

(2018) Robertas Ursache et al.   PLANT JOURNAL

Understanding the Genetic Basis of C4 Kranz Anatomy with a View to Engineering C3 Crops

(2018) Olga V. Sedelnikova et al.   Annual Review of Genetics

The DNA binding landscape of the maize AUXIN RESPONSE FACTOR family

(2018) Mary Galli et al.   Nature Communications

Secondary Wall Regulating NACs Differentially Bind at the Promoter at a CELLULOSE SYNTHASE A4 Cis-eQTL

(2018) Jennifer R. Olins et al.   Frontiers in Plant Science

Mapping genome-wide transcription-factor binding sites using DAP-seq

(2017) Anna Bartlett et al.   Nature Protocols

agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update

(2017) Tian Tian et al.   NUCLEIC ACIDS RESEARCH

NAC transcription factor JUNGBRUNNEN1 enhances drought tolerance in tomato

(2017) Venkatesh P. Thirumalaikumar et al.   PLANT BIOTECHNOLOGY JOURNAL

Ideal crop plant architecture is mediated bytassels replace upper ears1,a BTB/POZ ankyrin repeat gene directly targeted by TEOSINTE BRANCHED1

(2017) Zhaobin Dong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13

(2017) Saghar Ebrahimian-Motlagh et al.   Frontiers in Plant Science

A systems approach to a spatio-temporal understanding of the drought stress response in maize

(2017) Zhenyan Miao et al.   Scientific Reports

Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape

(2016) Ronan C. O’Malley et al.   CELL

Influence of extreme weather disasters on global crop production

(2016) Corey Lesk et al.   NATURE

Genetic variation in ZmVPP1 contributes to drought tolerance in maize seedlings

(2016) Xianglan Wang et al.   NATURE GENETICS

Vulnerability of Protoxylem and Metaxylem Vessels to Embolisms and Radial Refilling in a Vascular Bundle of Maize Leaves

(2016) Bae Geun Hwang et al.   Frontiers in Plant Science

Xylem development - from the cradle to the grave

(2015) Kamil Růžička et al.   NEW PHYTOLOGIST

Visualization of cellulose synthases in Arabidopsis secondary cell walls

(2015) Y. Watanabe et al.   SCIENCE

A transposable element in a NAC gene is associated with drought tolerance in maize seedlings

(2015) Hude Mao et al.   Nature Communications

NAC transcription factors in plant multiple abiotic stress responses: progress and prospects

(2015) Hongbo Shao et al.   Frontiers in Plant Science

TheArabidopsisCOBRA Protein Facilitates Cellulose Crystallization at the Plasma Membrane

(2014) Nadav Sorek et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

An Arabidopsis gene regulatory network for secondary cell wall synthesis

(2014) M. Taylor-Teeples et al.   NATURE

Arabidopsis NAC Domain Proteins, VND1 to VND5, Are Transcriptional Regulators of Secondary Wall Biosynthesis in Vessels

(2014) Jianli Zhou et al.   PLoS One

Maize LAZY1 Mediates Shoot Gravitropism and Inflorescence Development through Regulating Auxin Transport, Auxin Signaling, and Light Response

(2013) Z. Dong et al.   PLANT PHYSIOLOGY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Xylem cell death: emerging understanding of regulation and function

(2012) B. Bollhoner et al.   JOURNAL OF EXPERIMENTAL BOTANY

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

High Resolution Genome Wide Binding Event Finding and Motif Discovery Reveals Transcription Factor Spatial Binding Constraints

(2012) Yuchun Guo et al.   PLoS Computational Biology

MEME-ChIP: motif analysis of large DNA datasets

(2011) Philip Machanick et al.   BIOINFORMATICS

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(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

VASCULAR-RELATED NAC-DOMAIN 7 directly regulates the expression of a broad range of genes for xylem vessel formation

(2011) Masatoshi Yamaguchi et al.   PLANT JOURNAL

Overexpression of the maize Corngrass1 microRNA prevents flowering, improves digestibility, and increases starch content of switchgrass

(2011) G. S. Chuck et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The maize SBP-box transcription factor encoded by tasselsheath4 regulates bract development and the establishment of meristem boundaries

(2010) G. Chuck et al.   DEVELOPMENT

Global Analysis of Direct Targets of Secondary Wall NAC Master Switches in Arabidopsis

(2010) Ruiqin Zhong et al.   Molecular Plant

ArabidopsisVASCULAR-RELATED NAC-DOMAIN6 Directly Regulates the Genes That Govern Programmed Cell Death and Secondary Wall Formation during Xylem Differentiation

(2010) Kyoko Ohashi-Ito et al.   PLANT CELL

VND-INTERACTING2, a NAC Domain Transcription Factor, Negatively Regulates Xylem Vessel Formation inArabidopsis

(2010) Masatoshi Yamaguchi et al.   PLANT CELL

VASCULAR-RELATED NAC-DOMAIN6 and VASCULAR-RELATED NAC-DOMAIN7 Effectively Induce Transdifferentiation into Xylem Vessel Elements under Control of an Induction System

(2010) M. Yamaguchi et al.   PLANT PHYSIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Flowering as a Condition for Xylem Expansion in Arabidopsis Hypocotyl and Root

(2008) Richard Sibout et al.   CURRENT BIOLOGY

Cysteine proteases XCP1 and XCP2 aid micro-autolysis within the intact central vacuole during xylogenesis in Arabidopsis roots

(2008) Utku Avci et al.   PLANT JOURNAL