Single-cell analysis of clonal maintenance of transcriptional and epigenetic states in cancer cells

DNA methylation loss in late-replicating domains is linked to mitotic cell division

(2018) Wanding Zhou et al.   NATURE GENETICS

DNA methylation-based biomarkers and the epigenetic clock theory of ageing

(2018) Steve Horvath et al.   NATURE REVIEWS GENETICS

Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex

(2017) Chongyuan Luo et al.   SCIENCE

Epigenetic memory via concordant DNA methylation is inversely correlated to developmental potential of mammalian cells

(2017) Minseung Choi et al.   PLoS Genetics

DNA Methylation in Cancer and Aging

(2016) M. Klutstein et al.   CANCER RESEARCH

A Transcription Factor Pulse Can Prime Chromatin for Heritable Transcriptional Memory

(2016) Aimee Iberg-Badeaux et al.   MOLECULAR AND CELLULAR BIOLOGY

Capturing pairwise and multi-way chromosomal conformations using chromosomal walks

(2016) Pedro Olivares-Chauvet et al.   NATURE

Integrative analysis of 111 reference human epigenomes

(2015) Anshul Kundaje et al.   NATURE

Selective impairment of methylation maintenance is the major cause of DNA methylation reprogramming in the early embryo

(2015) Julia Arand et al.   Epigenetics & Chromatin

Comprehensive functional characterization of cancer–testis antigens defines obligate participation in multiple hallmarks of cancer

(2015) Kimberly E. Maxfield et al.   Nature Communications

Dynamic and static maintenance of epigenetic memory in pluripotent and somatic cells

(2014) Zohar Shipony et al.   NATURE

Massively Parallel Single-Cell RNA-Seq for Marker-Free Decomposition of Tissues into Cell Types

(2014) D. A. Jaitin et al.   SCIENCE

Budding Yeast Escape Commitment to the Phosphate Starvation Program Using Gene Expression Noise

(2013) Noam Vardi et al.   CURRENT BIOLOGY

Senescent cells harbour features of the cancer epigenome

(2013) Hazel A. Cruickshanks et al.   NATURE CELL BIOLOGY

UHRF1 targets DNMT1 for DNA methylation through cooperative binding of hemi-methylated DNA and methylated H3K9

(2013) Xiaoli Liu et al.   Nature Communications

Comprehensive molecular characterization of human colon and rectal cancer

(2012)   NATURE

Autosomal monoallelic expression in the mouse

(2012) Lillian M Zwemer et al.   GENOME BIOLOGY

Hallmarks of Cancer: The Next Generation

(2011) Douglas Hanahan et al.   CELL

The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

(2009) Rafael A Irizarry et al.   NATURE GENETICS