Phylogenetic network analysis as a parsimony optimization problem

On Computing the Maximum Parsimony Score of a Phylogenetic Network

(2015) Mareike Fischer et al.   SIAM JOURNAL ON DISCRETE MATHEMATICS

Phylogenetic Networks that Display a Tree Twice

(2014) Paul Cordue et al.   BULLETIN OF MATHEMATICAL BIOLOGY

Phylogeny of the symphytan grade of Hymenoptera: new pieces into the old jigsaw(fly) puzzle

(2014) Tobias Malm et al.   CLADISTICS

POY version 5: phylogenetic analysis using dynamic homologies under multiple optimality criteria

(2014) Ward C. Wheeler et al.   CLADISTICS

Historical linguistics as a sequence optimization problem: the evolution and biogeography of Uto-Aztecan languages

(2014) Ward C. Wheeler et al.   CLADISTICS

Exactly Computing the Parsimony Scores on Phylogenetic Networks Using Dynamic Programming

(2014) Lavanya Kannan et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Maximum Parsimony on Phylogenetic networks

(2012) Lavanya Kannan et al.   Algorithms for Molecular Biology

Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks

(2012) Daniel H. Huson et al.   SYSTEMATIC BIOLOGY

Genome-level homology and phylogeny of Shewanella (Gammaproteobacteria: lteromonadales: Shewanellaceae)

(2011) Rebecca B Dikow   BMC GENOMICS

Reassortment Networks and the Evolution of Pandemic H1N1 Swine-Origin Influenza

(2011) S. H. Bokhari et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A Survey of Combinatorial Methods for Phylogenetic Networks

(2010) Daniel H. Huson et al.   Genome Biology and Evolution

Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic

(2009) Gavin J. D. Smith et al.   NATURE