ITIS, a bioinformatics tool for accurate identification of transposon insertion sites using next-generation sequencing data

Transposon Insertion Finder (TIF): a novel program for detection of de novo transpositions of transposable elements

(2014) Mariko Nakagome et al.   BMC BIOINFORMATICS

An improved genome release (version Mt4.0) for the model legume Medicago truncatula

(2014) Haibao Tang et al.   BMC GENOMICS

TEMP: a computational method for analyzing transposable element polymorphism in populations

(2014) Jiali Zhuang et al.   NUCLEIC ACIDS RESEARCH

STENOFOLIA Recruits TOPLESS to Repress ASYMMETRIC LEAVES2 at the Leaf Margin and Promote Leaf Blade Outgrowth in Medicago truncatula

(2014) F. Zhang et al.   PLANT CELL

Global reprogramming of transcription and metabolism inMedicago truncatuladuring progressive drought and after rewatering

(2014) JI-YI ZHANG et al.   PLANT CELL AND ENVIRONMENT

An efficient reverse genetics platform in the model legumeMedicago truncatula

(2013) Xiaofei Cheng et al.   NEW PHYTOLOGIST

The C2H2 Transcription Factor REGULATOR OF SYMBIOSOME DIFFERENTIATION Represses Transcription of the Secretory Pathway Gene VAMP721a and Promotes Symbiosome Development in Medicago truncatula

(2013) S. Sinharoy et al.   PLANT CELL

Regulation of Compound Leaf Development by PHANTASTICA in Medicago truncatula

(2013) L. Ge et al.   PLANT PHYSIOLOGY

Insertional Mutagenesis Using Tnt1 Retrotransposon in Potato

(2013) S. Duangpan et al.   PLANT PHYSIOLOGY

A Regulatory Network-Based Approach Dissects Late Maturation Processes Related to the Acquisition of Desiccation Tolerance and Longevity of Medicago truncatula Seeds

(2013) J. Verdier et al.   PLANT PHYSIOLOGY

The Use of RelocaTE and Unassembled Short Reads to Produce High-Resolution Snapshots of Transposable Element Generated Diversity in Rice

(2013) Sofia M. C. Robb et al.   G3-Genes Genomes Genetics

pIRS: Profile-based Illumina pair-end reads simulator

(2012) Xuesong Hu et al.   BIOINFORMATICS

RetroSeq: transposable element discovery from next-generation sequencing data

(2012) Thomas M. Keane et al.   BIOINFORMATICS

Loss of Abaxial Leaf Epicuticular Wax in Medicago truncatula irg1/palm1 Mutants Results in Reduced Spore Differentiation of Anthracnose and Nonhost Rust Pathogens

(2012) S. R. Uppalapati et al.   PLANT CELL

Tnt1 Retrotransposon Mutagenesis: A Tool for Soybean Functional Genomics

(2012) Y. Cui et al.   PLANT PHYSIOLOGY

MtPAR MYB transcription factor acts as an on switch for proanthocyanidin biosynthesis in Medicago truncatula

(2012) J. Verdier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster

(2012) Robert Kofler et al.   PLoS Genetics

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

(2010) Murray P Cox et al.   BMC BIOINFORMATICS

Vapyrin, a gene essential for intracellular progression of arbuscular mycorrhizal symbiosis, is also essential for infection by rhizobia in the nodule symbiosis of Medicago truncatula

(2010) Jeremy D. Murray et al.   PLANT JOURNAL

The NemaGENETAG initiative: large scale transposon insertion gene-tagging in Caenorhabditis elegans

(2009) Daphne Bazopoulou et al.   GENETICA

Large-scale insertional mutagenesis using the Tnt1 retrotransposon in the model legume Medicago truncatula

(2008) Million Tadege et al.   PLANT JOURNAL

Gene expression profiling of M. truncatula transcription factors identifies putative regulators of grain legume seed filling

(2008) Jérôme Verdier et al.   PLANT MOLECULAR BIOLOGY