Predicting protein functions using incomplete hierarchical labels

The automated function prediction SIG looks back at 2013 and prepares for 2014

(2014) M. N. Wass et al.   BIOINFORMATICS

New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence

(2014) Mengfei Cao et al.   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Stringent homology-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions

(2014) Hufeng Zhou et al.   Biology Direct

Optimally Adaptive Power-Saving Protocols for Ad Hoc Networks Using the Hyper Quorum System

(2014) Shan-Hung Wu et al.   IEEE-ACM TRANSACTIONS ON NETWORKING

Enhancing the Functional Content of Eukaryotic Protein Interaction Networks

(2014) Gaurav Pandey et al.   PLoS One

Negative Example Selection for Protein Function Prediction: The NoGO Database

(2014) Noah Youngs et al.   PLoS Computational Biology

Protein function prediction by massive integration of evolutionary analyses and multiple data sources

(2013) Domenico Cozzetto et al.   BMC BIOINFORMATICS

Protein function prediction using domain families

(2013) Robert Rentzsch et al.   BMC BIOINFORMATICS

IntPath--an integrated pathway gene relationship database for model organisms and important pathogens

(2013) Hufeng Zhou et al.   BMC Systems Biology

A novel insight into Gene Ontology semantic similarity

(2013) Yungang Xu et al.   GENOMICS

A Review on Multi-Label Learning Algorithms

(2013) Min-Ling Zhang et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

Protein Function Prediction Using Multilabel Ensemble Classification

(2013) Guoxian Yu et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Protein Function Prediction with Incomplete Annotations

(2013) Guoxian Yu et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Function–Function Correlated Multi-label Protein Function Prediction over Interaction Networks

(2013) Hua Wang et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

A large-scale evaluation of computational protein function prediction

(2013) Predrag Radivojac et al.   NATURE METHODS

Large-scale gene function analysis with the PANTHER classification system

(2013) Huaiyu Mi et al.   Nature Protocols

An iterative approach of protein function prediction

(2011) Xiaoxiao Chi et al.   BMC BIOINFORMATICS

Predicting Protein Function by Multi-Label Correlated Semi-Supervised Learning

(2011) J. Q. Jiang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A Framework for Incorporating Functional Interrelationships into Protein Function Prediction Algorithms

(2011) Xiao-Fei Zhang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Synergy of multi-label hierarchical ensembles, data fusion, and cost-sensitive methods for gene functional inference

(2011) Nicolò Cesa-Bianchi et al.   MACHINE LEARNING

Predicting gene function using hierarchical multi-label decision tree ensembles

(2010) Leander Schietgat et al.   BMC BIOINFORMATICS

True Path Rule Hierarchical Ensembles for Genome-Wide Gene Function Prediction

(2010) Giorgio Valentini   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Incorporating functional inter-relationships into protein function prediction algorithms

(2009) Gaurav Pandey et al.   BMC BIOINFORMATICS

Semantic Similarity in Biomedical Ontologies

(2009) Catia Pesquita et al.   PLoS Computational Biology

Integration of relational and hierarchical network information for protein function prediction

(2008) Xiaoyu Jiang et al.   BMC BIOINFORMATICS

Linear Neighborhood Propagation and Its Applications

(2008) Jingdong Wang et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE