ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles
出版年份 2015 全文链接
标题
ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles
作者
关键词
Tumour heterogeneity, mRNA abundance profile, Deconvolution
出版物
BMC BIOINFORMATICS
Volume 16, Issue 1, Pages -
出版商
Springer Nature
发表日期
2015-05-14
DOI
10.1186/s12859-015-0597-x
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Fast and Elegant Numerical Linear Algebra Using theRcppEigenPackage
- (2015) Douglas Bates et al. Journal of Statistical Software
- UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples
- (2014) Niya Wang et al. BIOINFORMATICS
- An assessment of computational methods for estimating purity and clonality using genomic data derived from heterogeneous tumor tissue samples
- (2014) V. K. Yadav et al. BRIEFINGS IN BIOINFORMATICS
- Predictive Performance of Microarray Gene Signatures: Impact of Tumor Heterogeneity and Multiple Mechanisms of Drug Resistance
- (2014) C. K. Y. Ng et al. CANCER RESEARCH
- Global optimization of somatic variant identification in cancer genomes with a global community challenge
- (2014) Paul C Boutros et al. NATURE GENETICS
- DeMix: deconvolution for mixed cancer transcriptomes using raw measured data
- (2013) Jaeil Ahn et al. BIOINFORMATICS
- CellMix: a comprehensive toolbox for gene expression deconvolution
- (2013) R. Gaujoux et al. BIOINFORMATICS
- DeconRNASeq: a statistical framework for deconvolution of heterogeneous tissue samples based on mRNA-Seq data
- (2013) Ting Gong et al. BIOINFORMATICS
- Structural analysis on mutation residues and interfacial water molecules for human TIM disease understanding
- (2013) Zhenhua Li et al. BMC BIOINFORMATICS
- Digital sorting of complex tissues for cell type-specific gene expression profiles
- (2013) Yi Zhong et al. BMC BIOINFORMATICS
- Cancer heterogeneity: implications for targeted therapeutics
- (2013) R Fisher et al. BRITISH JOURNAL OF CANCER
- Computational deconvolution: extracting cell type-specific information from heterogeneous samples
- (2013) Shai S Shen-Orr et al. CURRENT OPINION IN IMMUNOLOGY
- Computational purification of individual tumor gene expression profiles leads to significant improvements in prognostic prediction
- (2013) Gerald Quon et al. Genome Medicine
- THetA: inferring intra-tumor heterogeneity from high-throughput DNA sequencing data
- (2013) Layla Oesper et al. GENOME BIOLOGY
- Absolute quantification of somatic DNA alterations in human cancer
- (2012) Scott L Carter et al. NATURE BIOTECHNOLOGY
- PERT: A Method for Expression Deconvolution of Human Blood Samples from Varied Microenvironmental and Developmental Conditions
- (2012) Wenlian Qiao et al. PLoS Computational Biology
- Semi-supervised Nonnegative Matrix Factorization for gene expression deconvolution: A case study
- (2011) Renaud Gaujoux et al. INFECTION GENETICS AND EVOLUTION
- Population-specific expression analysis (PSEA) reveals molecular changes in diseased brain
- (2011) Alexandre Kuhn et al. NATURE METHODS
- Gene expression deconvolution in linear space
- (2011) Yi Zhong et al. NATURE METHODS
- Optimal Deconvolution of Transcriptional Profiling Data Using Quadratic Programming with Application to Complex Clinical Blood Samples
- (2011) Ting Gong et al. PLoS One
- Robust unmixing of tumor states in array comparative genomic hybridization data
- (2010) David Tolliver et al. BIOINFORMATICS
- Statistical expression deconvolution from mixed tissue samples
- (2010) J. Clarke et al. BIOINFORMATICS
- Probabilistic analysis of gene expression measurements from heterogeneous tissues
- (2010) Timo Erkkilä et al. BIOINFORMATICS
- Biomarker discovery in heterogeneous tissue samples -taking the in-silico deconfounding approach
- (2010) Dirk Repsilber et al. BMC BIOINFORMATICS
- In silico Estimates of Tissue Components in Surgical Samples Based on Expression Profiling Data
- (2010) Y. Wang et al. CANCER RESEARCH
- Cell type–specific gene expression differences in complex tissues
- (2010) Shai S Shen-Orr et al. NATURE METHODS
- Allele-specific copy number analysis of tumors
- (2010) P. Van Loo et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- ISOLATE: a computational strategy for identifying the primary origin of cancers using high-throughput sequencing
- (2009) G. Quon et al. BIOINFORMATICS
- Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes
- (2009) Joel S. Parker et al. JOURNAL OF CLINICAL ONCOLOGY
- Deconvolution of Blood Microarray Data Identifies Cellular Activation Patterns in Systemic Lupus Erythematosus
- (2009) Alexander R. Abbas et al. PLoS One
- Tumor Immunobiological Differences in Prostate Cancer between African-American and European-American Men
- (2008) T. A. Wallace et al. CANCER RESEARCH
- Genome-wide transcriptional analysis of the human cell cycle identifies genes differentially regulated in normal and cancer cells
- (2008) Z. Bar-Joseph et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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