GPS-PBS: A Deep Learning Framework to Predict Phosphorylation Sites that Specifically Interact with Phosphoprotein-Binding Domains

GPS-Palm: a deep learning-based graphic presentation system for the prediction of S-palmitoylation sites in proteins

(2020) Wanshan Ning et al.   BRIEFINGS IN BIOINFORMATICS

GPS 5.0: An Update on the Prediction of Kinase-specific Phosphorylation Sites in Proteins

(2020) Chenwei Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

ELM—the eukaryotic linear motif resource in 2020

(2019) Manjeet Kumar et al.   NUCLEIC ACIDS RESEARCH

EPSD: a well-annotated data resource of protein phosphorylation sites in eukaryotes

(2019) Shaofeng Lin et al.   BRIEFINGS IN BIOINFORMATICS

WocEA: The visualization of functional enrichment results in word clouds

(2018) Wanshan Ning et al.   Journal of Genetics and Genomics

UniProt: a worldwide hub of protein knowledge

(2018)   NUCLEIC ACIDS RESEARCH

iEKPD 2.0: an update with rich annotations for eukaryotic protein kinases, protein phosphatases and proteins containing phosphoprotein-binding domains

(2018) Yaping Guo et al.   NUCLEIC ACIDS RESEARCH

Transfer learning across ontologies for phenome–genome association prediction

(2016) Raphael Petegrosso et al.   BIOINFORMATICS

Expansion of the Gene Ontology knowledgebase and resources

(2016)   NUCLEIC ACIDS RESEARCH

14-3-3-Pred: improved methods to predict 14-3-3-binding phosphopeptides

(2015) Fábio Madeira et al.   BIOINFORMATICS

The immunoglobulin tail tyrosine motif upgrades memory-type BCRs by incorporating a Grb2-Btk signalling module

(2014) Niklas Engels et al.   Nature Communications

ANIA: ANnotation and Integrated Analysis of the 14-3-3 interactome

(2014) Michele Tinti et al.   Database-The Journal of Biological Databases and Curation

Temporal regulation of EGF signalling networks by the scaffold protein Shc1

(2013) Yong Zheng et al.   NATURE

pLogo: a probabilistic approach to visualizing sequence motifs

(2013) Joseph P O'Shea et al.   NATURE METHODS

Phospho-Ser/Thr-binding domains: navigating the cell cycle and DNA damage response

(2013) H. Christian Reinhardt et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The SH2 Domain Interaction Landscape

(2013) Michele Tinti et al.   Cell Reports

Systematic analysis of the Plk-mediated phosphoregulation in eukaryotes

(2012) Z. Liu et al.   BRIEFINGS IN BIOINFORMATICS

The functions and regulation of the PTEN tumour suppressor

(2012) Min Sup Song et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Charting the Landscape of Tandem BRCT Domain-Mediated Protein Interactions

(2012) N. T. Woods et al.   Science Signaling

AS160 Phosphotyrosine-binding Domain Constructs Inhibit Insulin-stimulated GLUT4 Vesicle Fusion with the Plasma Membrane

(2011) Françoise Koumanov et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis

(2011) Renu Goel et al.   Molecular BioSystems

Phosphotyrosine Signaling: Evolving a New Cellular Communication System

(2010) Wendell A. Lim et al.   CELL

Cell Signaling by Receptor Tyrosine Kinases

(2010) Mark A. Lemmon et al.   CELL

Phosphorylation of PRAS40 on Thr246 by PKB/AKT facilitates efficient phosphorylation of Ser183 by mTORC1

(2010) Emmani B.M. Nascimento et al.   CELLULAR SIGNALLING

14-3-3γ Inhibition of MDMX-mediated p21 Turnover Independent of p53

(2010) Jun-Ho Lee et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Phospho.ELM: a database of phosphorylation sites--update 2011

(2010) H. Dinkel et al.   NUCLEIC ACIDS RESEARCH

Loops Govern SH2 Domain Specificity by Controlling Access to Binding Pockets

(2010) T. Kaneko et al.   Science Signaling

Genome-wide association analysis by lasso penalized logistic regression

(2009) Tong Tong Wu et al.   BIOINFORMATICS

Differential 14-3-3 Affinity Capture Reveals New Downstream Targets of Phosphatidylinositol 3-Kinase Signaling

(2009) Fanny Dubois et al.   MOLECULAR & CELLULAR PROTEOMICS

CaMKII-Mediated Phosphorylation of the Myosin Motor Myo1c Is Required for Insulin-Stimulated GLUT4 Translocation in Adipocytes

(2008) Ming Fai Yip et al.   Cell Metabolism

GPS 2.0, a Tool to Predict Kinase-specific Phosphorylation Sites in Hierarchy

(2008) Yu Xue et al.   MOLECULAR & CELLULAR PROTEOMICS

Prediction of phosphotyrosine signaling networks using a scoring matrix-assisted ligand identification approach

(2008) Lei Li et al.   NUCLEIC ACIDS RESEARCH

Activation of FOXO1 by Cdk1 in Cycling Cells and Postmitotic Neurons

(2008) Z. Yuan et al.   SCIENCE

Linear Motif Atlas for Phosphorylation-Dependent Signaling

(2008) M. L. Miller et al.   Science Signaling

The 14-3-3 proteins: integrators of diverse signaling cues that impact cell fate and cancer development

(2008) Deborah K. Morrison   TRENDS IN CELL BIOLOGY