Genome Sequencing and Analysis of the Fungal Symbiont of Sirex noctilio, Amylostereum areolatum: Revealing the Biology of Fungus-Insect Mutualism

Function, distribution, and annotation of characterized cellulases, xylanases, and chitinases from CAZy

(2018) Stanley T. C. Nguyen et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Whole-genome sequence and genome annotation of Xanthomonas citri pv. mangiferaeindicae, causal agent of bacterial black spot on Mangifera indica

(2018) Feng Liu et al.   ARCHIVES OF MICROBIOLOGY

Deciphering lignocellulose deconstruction by the white rot fungus Irpex lacteus based on genomic and transcriptomic analyses

(2018) Xing Qin et al.   Biotechnology for Biofuels

Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

(2018) Zhen Zeng et al.   BMC GENOMICS

Comparative modeling and molecular docking analysis of white, brown and soft rot fungal laccases using lignin model compounds for understanding the structural and functional properties of laccases

(2018) Ayyappa Kumar Sista Kameshwar et al.   JOURNAL OF MOLECULAR GRAPHICS & MODELLING

Pathogenic adaptations of Colletotrichum fungi revealed by genome wide gene family evolutionary analyses

(2018) Xiaofei Liang et al.   PLoS One

The Genome Sequences of 90 Mushrooms

(2018) Huiying Li et al.   Scientific Reports

Genome Sequencing and Carbohydrate-Active Enzyme (CAZyme) Repertoire of the White Rot Fungus Flammulina elastica

(2018) Young-Jin Park et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Effects of endophytic fungi in Mongolian pine on the selection behavior of woodwasp (Sirex noctilio ) and the growth of its fungal symbiont

(2018) Li-Xiang Wang et al.   PEST MANAGEMENT SCIENCE

Transcriptional analysis of the laccase-like gene from Burkholderia cepacia BNS and expression in Escherichia coli

(2018) Yinghui Ma et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Genomic discovery of the hypsin gene and biosynthetic pathways for terpenoids in Hypsizygus marmoreus

(2018) Byoungnam Min et al.   BMC GENOMICS

Phylogeny and taxonomy of Echinodontium and related genera

(2017) Shi-Liang Liu et al.   MYCOLOGIA

antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification

(2017) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

De novo genome assembly and annotation of rice sheath rot fungus Sarocladium oryzae reveals genes involved in Helvolic acid and Cerulenin biosynthesis pathways

(2016) Shailaja Hittalmani et al.   BMC GENOMICS

Investigating the effects of symbiotic fungi on the flight behaviour of Sirex noctilio (Hymenoptera: Siricidae)

(2016) Mark A. Sarvary et al.   CANADIAN ENTOMOLOGIST

A SMRT analysis of prokaryotic epigenomes

(2016) Ross Cloney   NATURE REVIEWS GENETICS

Redundans: an assembly pipeline for highly heterozygous genomes

(2016) Leszek P. Pryszcz et al.   NUCLEIC ACIDS RESEARCH

Extracellular electron transfer systems fuel cellulose oxidative degradation

(2016) D. Kracher et al.   SCIENCE

Rapid and Effective DNA Extraction Method with Bead Grinding for a Large Amount of Fungal DNA

(2016) M. WATANABE et al.   JOURNAL OF FOOD PROTECTION

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

The multigene family of fungal laccases and their expression in the white rot basidiomycete Flammulina velutipes

(2015) Wei Wang et al.   GENE

Comparative Genomics of Sibling Fungal Pathogenic Taxa Identifies Adaptive Evolution without Divergence in Pathogenicity Genes or Genomic Structure

(2015) Fabiano Sillo et al.   Genome Biology and Evolution

Behavioural response of the woodwaspSirex noctilioto volatile emissions of its fungal symbiont

(2015) A. A. Fernández Ajó et al.   JOURNAL OF APPLIED ENTOMOLOGY

Detection and Identification of the Invasive Sirex noctilio (Hymenoptera: Siricidae) Fungal Symbiont, Amylostereum areolatum (Russulales: Amylostereacea), in China and the Stimulating Effect of Insect Venom on Laccase Production by A. areolatum YQL03

(2015) D. Li et al.   JOURNAL OF ECONOMIC ENTOMOLOGY

Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities

(2015) László G. Nagy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

Adaptations for Symbiont-Mediated External Digestion in Sirex noctilio (Hymenoptera: Siricidae)

(2014) Brian M. Thompson et al.   ANNALS OF THE ENTOMOLOGICAL SOCIETY OF AMERICA

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Bark beetle (Ips grandicollis) disruption of woodwasp (Sirex noctilio) biocontrol: direct and indirect mechanisms

(2014) Fazila Yousuf et al.   FOREST ECOLOGY AND MANAGEMENT

Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

(2013) Anthony Levasseur et al.   Biotechnology for Biofuels

Fidelity Among Sirex Woodwasps and Their Fungal Symbionts

(2013) Ann E. Hajek et al.   MICROBIAL ECOLOGY

The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction

(2012) Mahajabeen Padamsee et al.   FUNGAL GENETICS AND BIOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

(2012) D. Floudas et al.   SCIENCE

Genomic Analysis of Xanthomonas oryzae Isolates from Rice Grown in the United States Reveals Substantial Divergence from Known X. oryzae Pathovars

(2011) L. R. Triplett et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A novel hybrid gene prediction method employing protein multiple sequence alignments

(2011) Oliver Keller et al.   BIOINFORMATICS

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Phylogenetic analysis of fungal ABC transporters

(2010) Andriy Kovalchuk et al.   BMC GENOMICS

Diversity of sesquiterpene synthases in the basidiomyceteCoprinus cinereus

(2009) Sean Agger et al.   MOLECULAR MICROBIOLOGY

SNAP: a web-based tool for identification and annotation of proxy SNPs using HapMap

(2008) A. D. Johnson et al.   BIOINFORMATICS

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

Rfam: updates to the RNA families database

(2008) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY