4.7 Article

Protein Phosphorylation Dynamics Under Carbon/Nitrogen-Nutrient Stress and Identification of a Cell Death-Related Receptor-Like Kinase in Arabidopsis

期刊

FRONTIERS IN PLANT SCIENCE
卷 11, 期 -, 页码 -

出版社

FRONTIERS MEDIA SA
DOI: 10.3389/fpls.2020.00377

关键词

sugar; nitrogen; phosphorylation; kinase; SnRK1; receptor-like kinase; metabolism; cell death

资金

  1. Japan Society for the Promotion of Science (JSPS) [15K18819, 17K08190]
  2. NOASTEC Foundation, Hokkaido University Young Scientist Support Program
  3. Max-Planck-Gesellschaft
  4. JSPS [15H0116705, 2629218885, 2666004604, 18H02467]
  5. Max Planck Society
  6. JSPS
  7. JSPS postdoctoral fellowship for Research in Japan
  8. Grants-in-Aid for Scientific Research [17K08190] Funding Source: KAKEN

向作者/读者索取更多资源

Nutrient availability, in particular the availability of sugar [carbon (C)] and nitrogen (N), is important for the regulation of plant metabolism and development. In addition to independent utilization of C and N nutrients, plants sense and respond to the balance of C and N nutrients (C/N-nutrient) available to them. High C/low N-nutrient stress has been shown to arrest early post-germinative growth while promoting progression to senescence in Arabidopsis. Although several signaling components of the C/N-nutrient response have been identified, the inclusive molecular basis of plant C/N-nutrient response remains unclear. This proteome analysis evaluated phosphorylation dynamics in response to high C/low N-nutrient stress. Phosphoproteomics under conditions of C/N-nutrient stress showed a global change in the phosphorylation status of proteins, including plasma membrane H+-ATPase, carbon and nitrogen metabolic enzymes and signaling proteins such as protein kinases and transcription factors. Further analyses suggested that SNF1-related protein kinase 1 (SnRK1) is involved in primary C/N-nutrient signal mediation via the transcriptional regulation of C/N-regulatory kinases. We also identified a leucine-rich repeat receptor-like kinase with extracellular malectin-like domain, named as LMK1, which was shown to possess cell death induction activity in plant leaves. These results provide important insight into the C/N-nutrient signaling pathways connecting nutrition stress to various cellular and physiological processes in plants.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.7
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Plant Sciences

Metabolic profiles in C3, C3-C4 intermediate, C4-like, and C4 species in the genus Flaveria

Gian Luca Borghi, Stephanie Arrivault, Manuela Guenther, David Barbosa Medeiros, Emilia Dell'Aversana, Giovanna Marta Fusco, Petronia Carillo, Martha Ludwig, Alisdair R. Fernie, John E. Lunn, Mark Stitt

Summary: Metabolite profiling and (13)CO(2)labelling studies of Flaveria species reveal the progressive re-wiring of various metabolic processes in the evolution from C(3)to C(4)photosynthesis. This includes the relocation of enzymes, establishment of shuttles, and changes in the concentration of organic acids. The findings support current models and provide further insights into the evolutionary path of C(4)photosynthesis in the genus Flaveria.

JOURNAL OF EXPERIMENTAL BOTANY (2022)

Article Multidisciplinary Sciences

Recruitment of an ancient branching program to suppress carpel development in maize flowers

Harry Klein, Joseph Gallagher, Edgar Demesa-Arevalo, Maria Jazmin Abraham-Juarez, Michelle Heeney, Regina Feil, John E. Lunn, Yuguo Xiao, George Chuck, Clinton Whipple, David Jackson, Madelaine Bartlett

Summary: Research has found that the carpels in maize undergo programmed cell death in specific parts of the inflorescence. The GT1 and RA3 genes play important roles in regulating this process, and their proteins co-localize in the developing floral carpels. Global expression analysis of single and double mutant flowers revealed common misregulation of genes. Additionally, RA3 enhances the branching role of GT1 in plants.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)

Article Plant Sciences

Cavity surface residues of PAD4 and SAG101 contribute to EDS1 dimer signaling specificity in plant immunity

Joram A. Dongus, Deepak D. Bhandari, Eva Penner, Dmitry Lapin, Sara C. Stolze, Anne Harzen, Monika Patel, Lani Archer, Lucas Dijkgraaf, Jyoti Shah, Hirofumi Nakagami, Jane E. Parker

Summary: Arabidopsis pathogen effector-triggered immunity is controlled by lipase-like proteins and HET-S/LOB-B domain proteins. The specific regions of PAD4 and SAG101 play a fundamental role in protein interactions and pathogen immunity.

PLANT JOURNAL (2022)

Article Plant Sciences

FLOWERING REPRESSOR AAA+ ATPase 1 is a novel regulator of perennial flowering in Arabis alpina

Natanael Vinegra de la Torre, Alice Vayssieres, Evelyn Obeng-Hinneh, Ulla Neumann, Yanhao Zhou, Ana Lazaro, Adrian Roggen, Hequan Sun, Sara C. Stolze, Hirofumi Nakagami, Korbinian Schneeberger, Ton Timmers, Maria C. Albani

Summary: This study characterized three allelic enhancers of pep1 in Arabis alpina, which lead to early flowering. It identified an AAA(+) ATPase gene, AaFRAT1, with unknown function, as the causal mutation for these enhancers. The study also investigated the expression patterns and subcellular localization of AaFRAT1, and found that it contributes to flowering time regulation and the perennial growth habit in A. alpina.

NEW PHYTOLOGIST (2022)

Review Biochemistry & Molecular Biology

The renaissance and enlightenment of Marchantia as a model system

John L. Bowman, Mario Arteaga-Vazquez, Frederic Berger, Liam N. Briginshaw, Philip Carella, Adolfo Aguilar-Cruz, Kevin M. Davies, Tom Dierschke, Liam Dolan, Ana E. Dorantes-Acosta, Tom J. Fisher, Eduardo Flores-Sandoval, Kazutaka Futagami, Kimitsune Ishizaki, Rubina Jibran, Takehiko Kanazawa, Hirotaka Kato, Takayuki Kohchi, Jonathan Levins, Shih-Shun Lin, Hirofumi Nakagami, Ryuichi Nishihama, Facundo Romani, Sebastian Schornack, Yasuhiro Tanizawa, Masayuki Tsuzuki, Takashi Ueda, Yuichiro Watanabe, Katsuyuki T. Yamato, Sabine Zachgo

Summary: The liverwort Marchantia polymorpha has been a model plant in biological studies since the 18th century and is currently experiencing a Renaissance in genomic and genetic research. Its simple cultivation, worldwide distribution, ease of crossing, and availability of genetic tools make it an ideal model organism for studying physiological, developmental, and evolutionary aspects of land plants.

PLANT CELL (2022)

Article Plant Sciences

In vivo protein kinase activity of SnRK1 fluctuates in Arabidopsis rosettes during light-dark cycles

Omri Avidan, Thiago A. Moraes, Virginie Mengin, Regina Feil, Filip Rolland, Mark Stitt, John E. Lunn

Summary: Sucrose-nonfermenting 1 (SNF1)-related kinase 1 (SnRK1) is a central hub in carbon and energy signaling in plants, with orthologues in yeast (SNF1) and animals (AMP-activated protein kinase, AMPK). Previous studies focused on in vitro assays or marker gene expression, providing limited information about in vivo SnRK1 activity. This study used Arabidopsis reporter lines to monitor in vivo SnRK1 activity and found that it increased towards the end of the night and further when the night was extended. Surprisingly, SnRK1 activity did not decline until about 12 hours into the light period, despite the rise in sugars after dawn. The metabolite trehalose 6-phosphate (Tre6P), which inhibits SnRK1 in vitro, was introduced into the plants, and it was found that elevated Tre6P decreased SnRK1 activity during the light period. These findings suggest that SnRK1 operates within a network that controls carbon utilization and diel sugar homeostasis, and its activity is regulated by Tre6P in a context-dependent manner.

PLANT PHYSIOLOGY (2023)

Editorial Material Plant Sciences

Next generation editors

John E. Lunn

Summary: The Journal of Experimental Botany has appointed six early career researchers as editorial interns to train the next generation of editors.

JOURNAL OF EXPERIMENTAL BOTANY (2023)

Article Biochemistry & Molecular Biology

The Arabidopsis transcription factor NLP2 regulates early nitrate responses and integrates nitrate assimilation with energy and carbon skeleton supply

Mickael Durand, Virginie Brehaut, Gilles Clement, Zsolt Kelemen, Julien Mace, Regina Feil, Garry Duville, Alexandra Launay-Avon, Christine Paysant-Le Roux, John E. Lunn, Francois Roudier, Anne Krapp

Summary: Nitrate signaling is crucial for plant growth under limited nitrate availability and NLP2 and NLP7 are key transcriptional regulators that coordinate the nitrate response by regulating carbon and energy metabolism.

PLANT CELL (2023)

Article Plant Sciences

Multi-year field trials provide a massive repository of trait data on a highly diverse population of tomato and uncover novel determinants of tomato productivity

Itay Zemach, Saleh Alseekh, Roni Tadmor-Levi, Josef Fisher, Shai Torgeman, Shay Trigerman, Julia Nauen, Shdema Filler Hayut, Varda Mann, Edan Rochsar, Richard Finkers, Regina Wendenburg, Sonia Osorio, Susan Bergmann, John E. Lunn, Yaniv Semel, Joseph Hirschberg, Alisdair R. Fernie, Dani Zamir

Summary: By using a phenotype-guided screen of over 7900 tomato accessions, new associations for complex traits such as fruit weight and total soluble solids were identified. The study presented phenotypic data from several years of trials and demonstrated the power of the dataset through two case studies. Genome-wide association analysis allowed the detection of novel loci associated with total soluble solid content and fruit weight, suggesting the usefulness of a phenotype-guided pre-selection strategy for finding target genes for breeding.

PLANT JOURNAL (2023)

Article Biology

Singlet oxygen-induced signalling depends on the metabolic status of the Chlamydomonas reinhardtii cell

Waeil Al Youssef, Regina Feil, Maureen Saint-Sorny, Xenie Johnson, John E. Lunn, Bernhard Grimm, Pawel Brzezowski

Summary: Using a mutant screen, the functional enzyme trehalose 6-phosphate phosphatase 1 (TSPP1) was identified as responsible for dephosphorylating trehalose 6-phosphate (Tre6P) in Chlamydomonas reinhardtii. Knocking out the tspp1 gene results in reprogramming of cell metabolism and impairment of O-1(2)-induced chloroplast retrograde signalling. Transcriptomic analysis and metabolite profiling indicate that the accumulation or deficiency of certain metabolites directly affect the O-1(2)-signalling process.

COMMUNICATIONS BIOLOGY (2023)

Editorial Material Plant Sciences

Society for Experimental Biology Centenary (1923-2023)

Donald R. Ort, John E. Lunn

JOURNAL OF EXPERIMENTAL BOTANY (2023)

Article Plant Sciences

Rising rates of starch degradation during daytime and trehalose 6-phosphate optimize carbon availability

Hirofumi Ishihara, Saleh Alseekh, Regina Feil, Pumi Perera, Gavin M. George, Piotr Niedzwiecki, Stephanie Arrivault, Samuel C. Zeeman, Alisdair R. Fernie, John E. Lunn, Alison M. Smith, Mark Stitt

Summary: The degradation of starch in the light is regulated by mechanisms similar to those operating at night. The rate of degradation depends on the time relative to dawn rather than dusk. Trehalose 6-phosphate inhibits degradation in the light. Starch degradation in the light plays an important role in stabilizing carbon availability and signaling, optimizing plant growth in natural light conditions.

PLANT PHYSIOLOGY (2022)

Article Plant Sciences

Sucrose synthases are not involved in starch synthesis in Arabidopsis leaves

Maximilian M. F. F. Funfgeld, Wei Wang, Hirofumi Ishihara, Stephanie Arrivault, Regina Feil, Alison M. Smith, Mark Stitt, John E. Lunn, Totte Niittyla

Summary: Through re-examination of experimental data, the study shows that starch synthesis in leaves primarily relies on ADPG pyrophosphorylase in chloroplasts, while sucrose synthase in the cytosol makes no substantial contribution to transitory starch synthesis in Arabidopsis leaves. This finding resolves a long-standing controversy in photosynthetic metabolism.

NATURE PLANTS (2022)

Article Biochemistry & Molecular Biology

A versatile Tn7 transposon-based bioluminescence tagging tool for quantitative and spatial detection of bacteria in plants

Ayumi Matsumoto, Titus Schlueter, Katharina Melkonian, Atsushi Takeda, Hirofumi Nakagami, Akira Mine

Summary: This study developed a bioluminescence-based tool for quantitative and spatial detection of bacteria in plants. By introducing the luxCDABE luciferase operon, bacterial titers in plants can be accurately reported, and it can be applied to various plant pathogenic bacteria. Additionally, these tools can be used to study the effects of plant immunity and bacterial effectors on bacterial growth, and the spatial distribution of bacteria in plant tissues can be observed using bioluminescence imaging.

PLANT COMMUNICATIONS (2022)

Article Plant Sciences

Coordination of microbe-host homeostasis by crosstalk with plant innate immunity

Ka-Wai Ma, Yulong Niu, Yong Jia, Jana Ordon, Charles Copeland, Aurelia Emonet, Niko Geldner, Rui Guan, Sara Christina Stolze, Hirofumi Nakagami, Ruben Garrido-Oter, Paul Schulze-Lefert

Summary: Plants grown in natural soil are colonized by phylogenetically structured communities of microbes known as the microbiota. Some beneficial commensal bacteria can suppress part of the plant innate immune system, ultimately leading to commensal-host homeostasis.

NATURE PLANTS (2021)

暂无数据