The Application of Nanopore Sequencing Technology to the Study of Dinoflagellates: A Proof of Concept Study for Rapid Sequence-Based Discrimination of Potentially Harmful Algae
出版年份 2020 全文链接
标题
The Application of Nanopore Sequencing Technology to the Study of Dinoflagellates: A Proof of Concept Study for Rapid Sequence-Based Discrimination of Potentially Harmful Algae
作者
关键词
-
出版物
Frontiers in Microbiology
Volume 11, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2020-05-08
DOI
10.3389/fmicb.2020.00844
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- NanoPipe—a web server for nanopore MinION sequencing data analysis
- (2019) Victoria Shabardina et al. GigaScience
- Variability and profiles of lipophilic toxins in bivalves from Great Britain during five and a half years of monitoring: azaspiracids and yessotoxins
- (2019) Monika Dhanji-Rapkova et al. HARMFUL ALGAE
- Playing a long game
- (2019) Michael Eisenstein NATURE METHODS
- Rapid and Cost-Efficient Enterovirus Genotyping from Clinical Samples Using Flongle Flow Cells
- (2019) Carole Grädel et al. Genes
- NanoPack: visualizing and processing long-read sequencing data
- (2018) Wouter De Coster et al. BIOINFORMATICS
- dinoref : A curated dinoflagellate (Dinophyceae) reference database for the 18S rRNA gene
- (2018) Solenn Mordret et al. Molecular Ecology Resources
- Fatal Canine Intoxications Linked to the Presence of Saxitoxins in Stranded Marine Organisms Following Winter Storm Activity
- (2018) Andrew Turner et al. Toxins
- Real-time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building
- (2018) Aaron Pomerantz et al. GigaScience
- A review of the global distribution of Alexandrium minutum (Dinophyceae) and comments on ecology and associated paralytic shellfish toxin profiles, with a focus on Northern Europe
- (2018) Adam Michael Lewis et al. JOURNAL OF PHYCOLOGY
- Harnessing the MinION: An example of how to establish long-read sequencing in a laboratory using challenging plant tissue from Eucalyptus pauciflora
- (2018) Miriam Schalamun et al. Molecular Ecology Resources
- Detection of Viral Pathogens With Multiplex Nanopore MinION Sequencing: Be Careful With Cross-Talk
- (2018) Yifei Xu et al. Frontiers in Microbiology
- Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks
- (2018) Ryan R. Wick et al. PLoS Computational Biology
- Genome complexity of harmful microalgae
- (2017) Silvia Casabianca et al. HARMFUL ALGAE
- Metagenomic arbovirus detection using MinION nanopore sequencing
- (2017) Jana Batovska et al. JOURNAL OF VIROLOGICAL METHODS
- Eutrophication, harmful algae and biodiversity — Challenging paradigms in a world of complex nutrient changes
- (2017) Patricia M. Glibert MARINE POLLUTION BULLETIN
- Molecular Techniques for the Detection of Organisms in Aquatic Environments, with Emphasis on Harmful Algal Bloom Species
- (2017) Linda Medlin et al. SENSORS
- Prevalence, Variability and Bioconcentration of Saxitoxin-Group in Different Marine Species Present in the Food Chain
- (2017) Javiera Oyaneder Terrazas et al. Toxins
- Multi-locus and long amplicon sequencing approach to study microbial diversity at species level using the MinION™ portable nanopore sequencer
- (2017) Alfonso Benítez-Páez et al. GigaScience
- Nanopore DNA Sequencing and Genome Assembly on the International Space Station
- (2017) Sarah L. Castro-Wallace et al. Scientific Reports
- Centrifuge: rapid and sensitive classification of metagenomic sequences
- (2016) Daehwan Kim et al. GENOME RESEARCH
- A Rapid Method for the Analysis of Paralytic Shellfish Toxins Utilizing Standard Pressure HPLC: Refinement of AOAC 2005.06
- (2016) Robert G. Hatfield et al. JOURNAL OF AOAC INTERNATIONAL
- Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding
- (2016) Alice Valentini et al. MOLECULAR ECOLOGY
- Real-time, portable genome sequencing for Ebola surveillance
- (2016) Joshua Quick et al. NATURE
- Comparison of potential diatom ‘barcode’ genes (the 18S rRNA gene and ITS, COI, rbcL) and their effectiveness in discriminating and determining species taxonomy in the Bacillariophyta
- (2015) Liliang Guo et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Nanopores: a sequencer in your backpack
- (2015) Vivien Marx NATURE METHODS
- Next-generation sequencing (NGS) for assessment of microbial water quality: current progress, challenges, and future opportunities
- (2015) BoonFei Tan et al. Frontiers in Microbiology
- Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer
- (2015) Andy Kilianski et al. GigaScience
- REVIEW: The detection of aquatic animal species using environmental DNA - a review of eDNA as a survey tool in ecology
- (2014) Helen C. Rees et al. JOURNAL OF APPLIED ECOLOGY
- High CO2 promotes the production of paralytic shellfish poisoning toxins by Alexandrium catenella from Southern California waters
- (2013) Avery O. Tatters et al. HARMFUL ALGAE
- Variability of paralytic shellfish toxin occurrence and profiles in bivalve molluscs from Great Britain from official control monitoring as determined by pre-column oxidation liquid chromatography and implications for applying immunochemical tests
- (2013) Andrew D. Turner et al. HARMFUL ALGAE
- DNA barcoding species in Alexandrium tamarense complex using ITS and proposing designation of five species
- (2013) Lu Wang et al. HARMFUL ALGAE
- Phylogenetic analysis guided by intragenomic SSU rDNA polymorphism refines classification of “Alexandrium tamarense” species complex
- (2012) Lilibeth N. Miranda et al. HARMFUL ALGAE
- Evaluating the Ribosomal Internal Transcribed Spacer (ITS) as a Candidate Dinoflagellate Barcode Marker
- (2012) Rowena F. Stern et al. PLoS One
- Improved phylogenetic resolution of toxic and non-toxic Alexandrium strains using a concatenated rDNA approach
- (2011) Russell J.S. Orr et al. HARMFUL ALGAE
- Incorporating molecular tools into routine HAB monitoring programs: Using qPCR to track invasive Prymnesium
- (2011) Richard M. Zamor et al. HARMFUL ALGAE
- An estimate of the cost of acute health effects from food- and water-borne marine pathogens and toxins in the USA
- (2011) Erin P. Ralston et al. JOURNAL OF WATER AND HEALTH
- Methods for quantitative evaluation of alveolar structure during in vivo microscopy
- (2011) M. Czaplik et al. RESPIRATORY PHYSIOLOGY & NEUROBIOLOGY
- Comparison of AOAC 2005.06 LC official method with other methodologies for the quantitation of paralytic shellfish poisoning toxins in UK shellfish species
- (2010) Andrew D. Turner et al. ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- Toward routine, DNA-based detection methods for marine pests
- (2010) Nathan J. Bott et al. BIOTECHNOLOGY ADVANCES
- OCEAN CLIMATE CHANGE, PHYTOPLANKTON COMMUNITY RESPONSES, AND HARMFUL ALGAL BLOOMS: A FORMIDABLE PREDICTIVE CHALLENGE
- (2010) Gustaaf M. Hallegraeff JOURNAL OF PHYCOLOGY
- Neurotoxic Alkaloids: Saxitoxin and Its Analogs
- (2010) Maria Wiese et al. Marine Drugs
- Using the molecular toolbox to compare harmful algal blooms in upwelling systems
- (2010) R.M. Kudela et al. PROGRESS IN OCEANOGRAPHY
- A feasibility study into the provision of Paralytic Shellfish Toxins laboratory reference materials by mass culture of Alexandrium and shellfish feeding experiments
- (2010) Wendy A. Higman et al. TOXICON
- Paralytic shellfish poisoning: Seafood safety and human health perspectives
- (2009) Stacey M. Etheridge TOXICON
- Recent trends in paralytic shellfish toxins in Puget Sound, relationships to climate, and capacity for prediction of toxic events
- (2008) Stephanie K. Moore et al. HARMFUL ALGAE
- Biological interactions in enclosed plankton communities including Alexandrium catenella and copepods: Role of phosphorus
- (2008) M. Estrada et al. JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now