Genome and Transcriptome Analyses Provide Insight Into the Omega-3 Long-Chain Polyunsaturated Fatty Acids Biosynthesis of Schizochytrium limacinum SR21

Role of docosahexaenoic acid in enhancement of docetaxel action in patient-derived breast cancer xenografts

(2019) Marnie Newell et al.   BREAST CANCER RESEARCH AND TREATMENT

Structural insight into the substrate specificity of acyl-CoA oxidase1 from Yarrowia lipolytica for short-chain dicarboxylyl-CoAs

(2018) Sangwoo Kim et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Comparative analysis reveals unexpected genome features of newly isolated Thraustochytrids strains: on ecological function and PUFAs biosynthesis

(2018) Zhiquan Song et al.   BMC GENOMICS

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

McMYB12 Transcription Factors Co-regulate Proanthocyanidin and Anthocyanin Biosynthesis in Malus Crabapple

(2017) Ji Tian et al.   Scientific Reports

Transcriptomic Analysis of the Regulation of Lipid Fraction Migration and Fatty Acid Biosynthesis in Schizochytrium sp.

(2017) Lujing Ren et al.   Scientific Reports

Description of two three-gendered nematode species in the new genus Auanema (Rhabditina) that are models for reproductive mode evolution

(2017) Natsumi Kanzaki et al.   Scientific Reports

Adaptive evolution of Schizochytrium sp. by continuous high oxygen stimulations to enhance docosahexaenoic acid synthesis

(2016) Xiao-Man Sun et al.   BIORESOURCE TECHNOLOGY

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Docosahexaenoic acid biosynthesis via fatty acyl elongase and Δ4-desaturase and its modulation by dietary lipid level and fatty acid composition in a marine vertebrate

(2015) Sofia Morais et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Reconstruction and analysis of the genome-scale metabolic model of schizochytrium limacinum SR21 for docosahexaenoic acid production

(2015) Chao Ye et al.   BMC GENOMICS

Introduction of ω-3 Desaturase Obviously Changed the Fatty Acid Profile and Sterol Content of Schizochytrium sp.

(2015) Lu-jing Ren et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

MYB96 stimulates C18 fatty acid elongation in Arabidopsis seeds

(2015) Hong Gil Lee et al.   Plant Biotechnology Reports

The Arabidopsis MYB96 Transcription Factor Is a Positive Regulator ofABSCISIC ACID-INSENSITIVE4in the Control of Seed Germination

(2015) Kyounghee Lee et al.   PLANT PHYSIOLOGY

The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis

(2015) S. Lin et al.   SCIENCE

Differential effects of nutrient limitations on biochemical constituents and docosahexaenoic acid production of Schizochytrium sp.

(2014) Lina Sun et al.   BIORESOURCE TECHNOLOGY

Compared with Daily, Weekly n–3 PUFA Intake Affects the Incorporation of Eicosapentaenoic Acid and Docosahexaenoic Acid into Platelets and Mononuclear Cells in Humans

(2014) Lucy M. Browning et al.   JOURNAL OF NUTRITION

Astaxanthin: Sources, Extraction, Stability, Biological Activities and Its Commercial Applications—A Review

(2014) Ranga Ambati et al.   Marine Drugs

Polyploid Evolution of the Brassicaceae during the Cenozoic Era

(2014) Sateesh Kagale et al.   PLANT CELL

Identification of Suitable Reference Genes for Gene Expression Normalization in qRT-PCR Analysis in Watermelon

(2014) Qiusheng Kong et al.   PLoS One

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Regulation of docosahexaenoic acid production by Schizochytrium sp.: effect of nitrogen addition

(2013) Lu-Jing Ren et al.   BIOPROCESS AND BIOSYSTEMS ENGINEERING

Pathways of Lipid Metabolism in Marine Algae, Co-Expression Network, Bottlenecks and Candidate Genes for Enhanced Production of EPA and DHA in Species of Chromista

(2013) Alice Mühlroth et al.   Marine Drugs

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Versatile Transformation System That Is Applicable to both Multiple Transgene Expression and Gene Targeting for Thraustochytrids

(2012) Keishi Sakaguchi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Yeast extract stimulates production of glycolipid biosurfactants, mannosylerythritol lipids, by Pseudozyma hubeiensis SY62

(2011) Masaaki Konishi et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

A Novel Fusarium Species Causes a Canker Disease of the Critically Endangered Conifer, Torreya taxifolia

(2011) Jason A. Smith et al.   PLANT DISEASE

Characterization of Both Polyunsaturated Fatty Acid Biosynthetic Pathways in Schizochytrium sp.

(2009) J. Casey Lippmeier et al.   LIPIDS

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

AUGUSTUS at MediGRID: Adaption of a bioinformatics application to grid computing for efficient genome analysis

(2008) Dietmar Sommerfeld et al.   Future Generation Computer Systems-The International Journal of eScience

The expression of genes involved in the ergosterol biosynthesis pathway inCandida albicansandCandida dubliniensisbiofilms exposed to fluconazole

(2008) Silvia Borecká-Melkusová et al.   MYCOSES

Arabidopsis R2R3-MYB transcription factor AtMYB60 functions as a transcriptional repressor of anthocyanin biosynthesis in lettuce (Lactuca sativa)

(2008) Jong-Sug Park et al.   PLANT CELL REPORTS