ASEP: Gene-based detection of allele-specific expression across individuals in a population by RNA sequencing

Regulation of innate immune functions by guanylate-binding proteins

(2018) Gerrit J.K. Praefcke   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Renal compartment–specific genetic variation analyses identify new pathways in chronic kidney disease

(2018) Chengxiang Qiu et al.   NATURE MEDICINE

Genetic effects on gene expression across human tissues

(2017) François Aguet et al.   NATURE

Genetic regulatory effects modified by immune activation contribute to autoimmune disease associations

(2017) Sarah Kim-Hellmuth et al.   Nature Communications

Macrophages in Tissue Repair, Regeneration, and Fibrosis

(2016) Thomas A. Wynn et al.   IMMUNITY

GeneiASE: Detection of condition-dependent and static allele-specific expression from RNA-seq data without haplotype information

(2016) Daniel Edsgärd et al.   Scientific Reports

Functional Analysis and Transcriptomic Profiling of iPSC-Derived Macrophages and Their Application in Modeling Mendelian Disease

(2015) H. Zhang et al.   CIRCULATION RESEARCH

SPSB1, a Novel Negative Regulator of the Transforming Growth Factor-β Signaling Pathway Targeting the Type II Receptor

(2015) Sheng Liu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Extracellular Superoxide Dismutase Protects against Proteinuric Kidney Disease

(2015) R. J. Tan et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

Immunomodulatory lysophosphatidylserines are regulated by ABHD16A and ABHD12 interplay

(2015) Siddhesh S Kamat et al.   Nature Chemical Biology

WASP: allele-specific software for robust molecular quantitative trait locus discovery

(2015) Bryce van de Geijn et al.   NATURE METHODS

Conditional deletion of caspase-8 in macrophages alters macrophage activation in a RIPK-dependent manner

(2015) Carla M. Cuda et al.   ARTHRITIS RESEARCH & THERAPY

Mutations in PGAP3 Impair GPI-Anchor Maturation, Causing a Subtype of Hyperphosphatasia with Mental Retardation

(2014) Malcolm F. Howard et al.   AMERICAN JOURNAL OF HUMAN GENETICS

QuASAR: quantitative allele-specific analysis of reads

(2014) Chris T. Harvey et al.   BIOINFORMATICS

The translation elongation factor eEF2 is a novel tumor-associated antigen overexpressed in various types of cancers

(2014) YUSUKE OJI et al.   INTERNATIONAL JOURNAL OF ONCOLOGY

Functional Roles of p38 Mitogen-Activated Protein Kinase in Macrophage-Mediated Inflammatory Responses

(2014) Yanyan Yang et al.   MEDIATORS OF INFLAMMATION

Genetic variation in the GSTM3 promoter confer risk and prognosis of renal cell carcinoma by reducing gene expression

(2013) X Tan et al.   BRITISH JOURNAL OF CANCER

Expression quantitative trait loci: present and future

(2013) A. C. Nica et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

DDX24 Negatively Regulates Cytosolic RNA-Mediated Innate Immune Signaling

(2013) Zhe Ma et al.   PLoS Pathogens

Five Years of GWAS Discovery

(2012) Peter M. Visscher et al.   AMERICAN JOURNAL OF HUMAN GENETICS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Powerful Identification of Cis-regulatory SNPs in Human Primary Monocytes Using Allele-Specific Gene Expression

(2012) Jonas Carlsson Almlöf et al.   PLoS One

CYP24A1 and kidney disease

(2011) Martin Petkovich et al.   CURRENT OPINION IN NEPHROLOGY AND HYPERTENSION

Plasma apolipoprotein C-III metabolism in patients with chronic kidney disease

(2011) Esther M. M. Ooi et al.   JOURNAL OF LIPID RESEARCH

IRF5 promotes inflammatory macrophage polarization and TH1-TH17 responses

(2011) Thomas Krausgruber et al.   NATURE IMMUNOLOGY

Trait-Associated SNPs Are More Likely to Be eQTLs: Annotation to Enhance Discovery from GWAS

(2010) Dan L. Nicolae et al.   PLoS Genetics

Statistical Power of Expression Quantitative Trait Loci for Mapping of Complex Trait Loci in Natural Populations

(2008) P. Schliekelman   GENETICS

The kinase p38α serves cell type–specific inflammatory functions in skin injury and coordinates pro- and anti-inflammatory gene expression

(2008) Chun Kim et al.   NATURE IMMUNOLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Revealing the architecture of gene regulation: the promise of eQTL studies

(2008) Yoav Gilad et al.   TRENDS IN GENETICS