Robust landscapes of ribosome dwell times and aminoacyl-tRNAs in response to nutrient stress in liver
出版年份 2020 全文链接
标题
Robust landscapes of ribosome dwell times and aminoacyl-tRNAs in response to nutrient stress in liver
作者
关键词
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出版物
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 117, Issue 17, Pages 9630-9641
出版商
Proceedings of the National Academy of Sciences
发表日期
2020-04-16
DOI
10.1073/pnas.1918145117
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- High-Resolution Ribosome Profiling Defines Discrete Ribosome Elongation States and Translational Regulation during Cellular Stress
- (2019) Colin Chih-Chien Wu et al. MOLECULAR CELL
- Consolidation alters motor sequence-specific distributed representations
- (2019) Basile Pinsard et al. eLife
- A systematically-revised ribosome profiling method for bacteria reveals pauses at single-codon resolution
- (2019) Fuad Mohammad et al. eLife
- The Translational Landscape of the Human Heart
- (2019) Sebastiaan van Heesch et al. CELL
- eIF5A is required for autophagy by mediating ATG3 translation
- (2018) Michal Lubas et al. EMBO REPORTS
- Translational Control through Differential Ribosome Pausing during Amino Acid Limitation in Mammalian Cells
- (2018) Alicia M. Darnell et al. MOLECULAR CELL
- Accurate design of translational output by a neural network model of ribosome distribution
- (2018) Robert Tunney et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Accurate design of translational output by a neural network model of ribosome distribution
- (2018) Robert Tunney et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- The impact of ribosomal interference, codon usage, and exit tunnel interactions on translation elongation rate variation
- (2018) Khanh Dao Duc et al. PLoS Genetics
- Scikit-ribo Enables Accurate Estimation and Robust Modeling of Translation Dynamics at Codon Resolution
- (2018) Han Fang et al. Cell Systems
- Codon-specific translation reprogramming promotes resistance to targeted therapy
- (2018) Francesca Rapino et al. NATURE
- Ribosome Profiling: Global Views of Translation
- (2018) Nicholas T. Ingolia et al. Cold Spring Harbor Perspectives in Biology
- ZNF598 Is a Quality Control Sensor of Collided Ribosomes
- (2018) Szymon Juszkiewicz et al. MOLECULAR CELL
- Transcriptome-wide Analysis of Roles for tRNA Modifications in Translational Regulation
- (2017) Hsin-Jung Chou et al. MOLECULAR CELL
- Ribosome Collision Is Critical for Quality Control during No-Go Decay
- (2017) Carrie L. Simms et al. MOLECULAR CELL
- Determination of tRNA aminoacylation levels by high-throughput sequencing
- (2017) Molly E. Evans et al. NUCLEIC ACIDS RESEARCH
- eIF5A facilitates translation termination globally and promotes the elongation of many non polyproline-specific tripeptide sequences
- (2017) Vicent Pelechano et al. NUCLEIC ACIDS RESEARCH
- Case for the genetic code as a triplet of triplets
- (2017) Fabienne F. V. Chevance et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Celebrating wobble decoding: Half a century and still much is new
- (2017) Paul F. Agris et al. RNA Biology
- Synonymous Codons: Choose Wisely for Expression
- (2017) Christina E. Brule et al. TRENDS IN GENETICS
- Limb proportions show developmental plasticity in response to embryo movement
- (2017) A. S. Pollard et al. Scientific Reports
- Characterizing Expression and Processing of Precursor and Mature Human tRNAs by Hydro-tRNAseq and PAR-CLIP
- (2017) Tasos Gogakos et al. Cell Reports
- Selective stalling of human translation through small-molecule engagement of the ribosome nascent chain
- (2017) Nathanael G. Lintner et al. PLOS BIOLOGY
- Analysis of Ribosome Stalling and Translation Elongation Dynamics by Deep Learning
- (2017) Sai Zhang et al. Cell Systems
- tRNA biology in the omics era: Stress signalling dynamics and cancer progression
- (2016) Andrea Orioli BIOESSAYS
- Mapping the non-standardized biases of ribosome profiling
- (2016) Alexander Bartholomäus et al. BIOLOGICAL CHEMISTRY
- Adjacent Codons Act in Concert to Modulate Translation Efficiency in Yeast
- (2016) Caitlin E. Gamble et al. CELL
- Ribosome Footprint Profiling of Translation throughout the Genome
- (2016) Nicholas T. Ingolia CELL
- The DEAD-Box Protein Dhh1p Couples mRNA Decay and Translation by Monitoring Codon Optimality
- (2016) Aditya Radhakrishnan et al. CELL
- Modulated Expression of Specific tRNAs Drives Gene Expression and Cancer Progression
- (2016) Hani Goodarzi et al. CELL
- Dual randomization of oligonucleotides to reduce the bias in ribosome-profiling libraries
- (2016) Aarón Lecanda et al. METHODS
- Tumour-specific proline vulnerability uncovered by differential ribosome codon reading
- (2016) Fabricio Loayza-Puch et al. NATURE
- tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes
- (2016) Todd M. Lowe et al. NUCLEIC ACIDS RESEARCH
- Codon optimality controls differential mRNA translation during amino acid starvation
- (2016) Mridusmita Saikia et al. RNA
- Comparative survey of the relative impact of mRNA features on local ribosome profiling read density
- (2016) Patrick B. F. O’Connor et al. Nature Communications
- Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling
- (2016) Fuad Mohammad et al. Cell Reports
- Glucocerebrosidase Deficiency in Drosophila Results in α-Synuclein-Independent Protein Aggregation and Neurodegeneration
- (2016) Marie Y. Davis et al. PLoS Genetics
- Widespread Co-translational RNA Decay Reveals Ribosome Dynamics
- (2015) Vicent Pelechano et al. CELL
- Optimization of Codon Translation Rates via tRNA Modifications Maintains Proteome Integrity
- (2015) Danny D. Nedialkova et al. CELL
- Codon Optimality Is a Major Determinant of mRNA Stability
- (2015) Vladimir Presnyak et al. CELL
- The tRNA methyltransferase Dnmt2 is required for accurate polypeptide synthesis during haematopoiesis
- (2015) F. Tuorto et al. EMBO JOURNAL
- Transcriptome-wide measurement of ribosomal occupancy by ribosome profiling
- (2015) Florian Aeschimann et al. METHODS
- Codon Usage Influences the Local Rate of Translation Elongation to Regulate Co-translational Protein Folding
- (2015) Chien-Hung Yu et al. MOLECULAR CELL
- Codon Bias as a Means to Fine-Tune Gene Expression
- (2015) Tessa E.F. Quax et al. MOLECULAR CELL
- Efficient and quantitative high-throughput tRNA sequencing
- (2015) Guanqun Zheng et al. NATURE METHODS
- ARM-seq: AlkB-facilitated RNA methylation sequencing reveals a complex landscape of modified tRNA fragments
- (2015) Aaron E Cozen et al. NATURE METHODS
- Trade-offs between tRNA abundance and mRNA secondary structure support smoothing of translation elongation rate
- (2015) Thomas E. Gorochowski et al. NUCLEIC ACIDS RESEARCH
- Circadian and feeding rhythms differentially affect rhythmic mRNA transcription and translation in mouse liver
- (2015) Florian Atger et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- High-Precision Analysis of Translational Pausing by Ribosome Profiling in Bacteria Lacking EFP
- (2015) Christopher J. Woolstenhulme et al. Cell Reports
- Understanding Biases in Ribosome Profiling Experiments Reveals Signatures of Translation Dynamics in Yeast
- (2015) Jeffrey A. Hussmann et al. PLoS Genetics
- Dom34 Rescues Ribosomes in 3′ Untranslated Regions
- (2014) Nicholas R. Guydosh et al. CELL
- Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation
- (2014) C. Pop et al. Molecular Systems Biology
- Ribosome profiling: new views of translation, from single codons to genome scale
- (2014) Nicholas T. Ingolia NATURE REVIEWS GENETICS
- Translation inhibitors cause abnormalities in ribosome profiling experiments
- (2014) Maxim V. Gerashchenko et al. NUCLEIC ACIDS RESEARCH
- The effect of tRNA levels on decoding times of mRNA codons
- (2014) Alexandra Dana et al. NUCLEIC ACIDS RESEARCH
- Principles of ER cotranslational translocation revealed by proximity-specific ribosome profiling
- (2014) C. H. Jan et al. SCIENCE
- Codon-by-Codon Modulation of Translational Speed and Accuracy Via mRNA Folding
- (2014) Jian-Rong Yang et al. PLOS BIOLOGY
- Measurement of average decoding rates of the 61 sense codons in vivo
- (2014) Justin Gardin et al. eLife
- Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments
- (2014) Liana F Lareau et al. eLife
- Dynamic regulation of genome-wide pre-mRNA splicing and stress tolerance by the Sm-like protein LSm5 in Arabidopsis
- (2014) Peng Cui et al. GENOME BIOLOGY
- Translation elongation can control translation initiation on eukaryotic mRNAs
- (2013) Dominique Chu et al. EMBO JOURNAL
- Translational Redefinition of UGA Codons Is Regulated by Selenium Availability
- (2013) Michael T. Howard et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Widespread Regulation of Translation by Elongation Pausing in Heat Shock
- (2013) Reut Shalgi et al. MOLECULAR CELL
- eIF5A Promotes Translation of Polyproline Motifs
- (2013) Erik Gutierrez et al. MOLECULAR CELL
- Positively Charged Residues Are the Major Determinants of Ribosomal Velocity
- (2013) Catherine A. Charneski et al. PLOS BIOLOGY
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- A multiplicity of factors contributes to selective RNA polymerase III occupancy of a subset of RNA polymerase III genes in mouse liver
- (2012) D. Canella et al. GENOME RESEARCH
- Evolutionary conservation of codon optimality reveals hidden signatures of cotranslational folding
- (2012) Sebastian Pechmann et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Genome-wide ribosome profiling reveals complex translational regulation in response to oxidative stress
- (2012) M. V. Gerashchenko et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Conservation of the relative tRNA composition in healthy and cancerous tissues
- (2012) S. Mahlab et al. RNA
- The Mechanism of Eukaryotic Translation Initiation: New Insights and Challenges
- (2012) A. G. Hinnebusch et al. Cold Spring Harbor Perspectives in Biology
- The Contributions of Wobbling and Superwobbling to the Reading of the Genetic Code
- (2012) Sibah Alkatib et al. PLoS Genetics
- Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes
- (2011) Nicholas T. Ingolia et al. CELL
- mRNA pseudoknot structures can act as ribosomal roadblocks
- (2011) Jesper Tholstrup et al. NUCLEIC ACIDS RESEARCH
- Gene Expression Profile Change and Associated Physiological and Pathological Effects in Mouse Liver Induced by Fasting and Refeeding
- (2011) Fang Zhang et al. PLoS One
- Wobble base-pairing slows in vivo translation elongation in metazoans
- (2011) M. Stadler et al. RNA
- GC3 biology in corn, rice, sorghum and other grasses
- (2010) Tatiana V Tatarinova et al. BMC GENOMICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Slow peptide bond formation by proline and other N-alkylamino acids in translation
- (2008) M. Y. Pavlov et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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